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This page was generated on 2022-04-13 12:06:49 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for MACPET on tokay2


To the developers/maintainers of the MACPET package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MACPET.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1029/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MACPET 1.14.0  (landing page)
Ioannis Vardaxis
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/MACPET
git_branch: RELEASE_3_14
git_last_commit: d1b9a5c
git_last_commit_date: 2021-10-26 12:41:58 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  ERROR    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  ERROR    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: MACPET
Version: 1.14.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MACPET_1.14.0.tar.gz && rm -rf MACPET.buildbin-libdir && mkdir MACPET.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MACPET.buildbin-libdir MACPET_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MACPET_1.14.0.zip && rm MACPET_1.14.0.tar.gz MACPET_1.14.0.zip
StartedAt: 2022-04-12 06:38:31 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:38:49 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 18.2 seconds
RetCode: 1
Status:   ERROR  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MACPET_1.14.0.tar.gz && rm -rf MACPET.buildbin-libdir && mkdir MACPET.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MACPET.buildbin-libdir MACPET_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MACPET_1.14.0.zip && rm MACPET_1.14.0.tar.gz MACPET_1.14.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 83  850k   83  714k    0     0  1274k      0 --:--:-- --:--:-- --:--:-- 1273k
100  850k  100  850k    0     0  1417k      0 --:--:-- --:--:-- --:--:-- 1417k

install for i386

* installing *source* package 'MACPET' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/bigmemory/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/bigmemory/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Stage_0_FastqFilteringSubFunctions.cpp -o Stage_0_FastqFilteringSubFunctions.o
Stage_0_FastqFilteringSubFunctions.cpp: In function 'SEXPREC* FilterFastqYield_fun_Rcpp(int&, std::vector<std::__cxx11::basic_string<char> >&, Rcpp::NumericVector&, std::vector<std::__cxx11::basic_string<char> >&, Rcpp::NumericVector&, std::__cxx11::string&, std::__cxx11::string&, int&, int&, int&)':
Stage_0_FastqFilteringSubFunctions.cpp:55:36: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare]
         if(SreadFastq1[i].find(NNs)!=-1||SreadFastq2[i].find(NNs)!=-1){
            ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
Stage_0_FastqFilteringSubFunctions.cpp:55:66: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare]
         if(SreadFastq1[i].find(NNs)!=-1||SreadFastq2[i].find(NNs)!=-1){
                                          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/bigmemory/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Stage_3_PeakFinderSubFunctions.cpp -o Stage_3_PeakFinderSubFunctions.o
Stage_3_PeakFinderSubFunctions.cpp: In function 'void Mstep2D_Rcpp(Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, const int&, const int&, const NumericVector&, const NumericVector&, const NumericVector&, const NumericVector&, const NumericVector&, const NumericVector&, const NumericMatrix&, const NumericMatrix&)':
Stage_3_PeakFinderSubFunctions.cpp:1146:76: error: 'DOUBLE_EPS' was not declared in this scope
             double Ak_g=1.0/std::max(1.0-B_my_g[g-1]/C_my_g[g-1],std::sqrt(DOUBLE_EPS));
                                                                            ^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp:1146:76: note: suggested alternative: 'ENABLE_NLS'
             double Ak_g=1.0/std::max(1.0-B_my_g[g-1]/C_my_g[g-1],std::sqrt(DOUBLE_EPS));
                                                                            ^~~~~~~~~~
                                                                            ENABLE_NLS
Stage_3_PeakFinderSubFunctions.cpp: In function 'void NR_lambdax_g_Rcpp(double&, const double&, const double&, const double&)':
Stage_3_PeakFinderSubFunctions.cpp:1217:45: error: 'DOUBLE_EPS' was not declared in this scope
         if(lambdax>=0.0) lambdax=-std::sqrt(DOUBLE_EPS);
                                             ^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp:1217:45: note: suggested alternative: 'ENABLE_NLS'
         if(lambdax>=0.0) lambdax=-std::sqrt(DOUBLE_EPS);
                                             ^~~~~~~~~~
                                             ENABLE_NLS
Stage_3_PeakFinderSubFunctions.cpp:1218:50: error: 'DOUBLE_EPS' was not declared in this scope
         if(lambdax<=-1.0) lambdax=-1.0+std::sqrt(DOUBLE_EPS);
                                                  ^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp:1218:50: note: suggested alternative: 'ENABLE_NLS'
         if(lambdax<=-1.0) lambdax=-1.0+std::sqrt(DOUBLE_EPS);
                                                  ^~~~~~~~~~
                                                  ENABLE_NLS
Stage_3_PeakFinderSubFunctions.cpp: In function 'void NR_lambday_g_Rcpp(double&, const double&, const double&, const double&)':
Stage_3_PeakFinderSubFunctions.cpp:1257:48: error: 'DOUBLE_EPS' was not declared in this scope
         if(lambday>=1.0) lambday=1.0-std::sqrt(DOUBLE_EPS);
                                                ^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp:1257:48: note: suggested alternative: 'ENABLE_NLS'
         if(lambday>=1.0) lambday=1.0-std::sqrt(DOUBLE_EPS);
                                                ^~~~~~~~~~
                                                ENABLE_NLS
Stage_3_PeakFinderSubFunctions.cpp:1258:44: error: 'DOUBLE_EPS' was not declared in this scope
         if(lambday<=0.0) lambday=std::sqrt(DOUBLE_EPS);
                                            ^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp:1258:44: note: suggested alternative: 'ENABLE_NLS'
         if(lambday<=0.0) lambday=std::sqrt(DOUBLE_EPS);
                                            ^~~~~~~~~~
                                            ENABLE_NLS
make: *** [C:/Users/BIOCBU~1/BBS-3~1.14-/R/etc/i386/Makeconf:245: Stage_3_PeakFinderSubFunctions.o] Error 1
ERROR: compilation failed for package 'MACPET'
* removing 'C:/Users/biocbuild/bbs-3.14-bioc/meat/MACPET.buildbin-libdir/MACPET'