############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/LowMACA_1.24.0.tar.gz && rm -rf LowMACA.buildbin-libdir && mkdir LowMACA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LowMACA.buildbin-libdir LowMACA_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL LowMACA_1.24.0.zip && rm LowMACA_1.24.0.tar.gz LowMACA_1.24.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 1 110k 1 1139 0 0 13794 0 0:00:08 --:--:-- 0:00:08 13722 100 110k 100 110k 0 0 575k 0 --:--:-- --:--:-- --:--:-- 574k install for i386 * installing *source* package 'LowMACA' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'LowMACA' finding HTML links ... done BLOSUM62 html LowMACA-class html LowMACA-package html LowMACA_AML html alignSequences html allPfamAnalysis html bpAll html entropy html getMutations html lfm html lfmSingleSequence html lmAlignment html lmEntropy html lmMutations html lmObj html lmParams html lmPlot html lmPlotSingleSequence html mapMutations html newLowMACA html nullProfile html parallelize html protter html setup html showTumorType html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Checking if clustalo is in the PATH... Checking clustalo Version... Checking perl installation... Checking perl modules XML::Simple and LWP... ** testing if installed package can be loaded from final location Checking if clustalo is in the PATH... Checking clustalo Version... Checking perl installation... Checking perl modules XML::Simple and LWP... ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'LowMACA' ... ** testing if installed package can be loaded Checking if clustalo is in the PATH... Checking clustalo Version... Checking perl installation... Checking perl modules XML::Simple and LWP... * MD5 sums packaged installation of 'LowMACA' as LowMACA_1.24.0.zip * DONE (LowMACA) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'LowMACA' successfully unpacked and MD5 sums checked