############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/LineagePulse_1.14.0.tar.gz && rm -rf LineagePulse.buildbin-libdir && mkdir LineagePulse.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LineagePulse.buildbin-libdir LineagePulse_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL LineagePulse_1.14.0.zip && rm LineagePulse_1.14.0.tar.gz LineagePulse_1.14.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 75738 100 75738 0 0 386k 0 --:--:-- --:--:-- --:--:-- 387k install for i386 * installing *source* package 'LineagePulse' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Note: possible error in 'evalLogLikGeneMM(vecCounts = vecCounts, ': unused arguments (matDispParam = matDispParam, matDropParam = matDropParam, matWeights = matWeights) Note: possible error in 'evalLogLikGeneMM(vecCounts = vecCounts, ': unused arguments (matDispParam = do.call(cbind, lapply(seq_len(ncol(matWeights)), function(m) vecDispParam)), matDropParam = do.call(cbind, lapply(seq_len(ncol(matWeights)), function(m) vecPiParam)), matWeights = matWeights) ** help *** installing help indices converting help for package 'LineagePulse' finding HTML links ... done LPsetters html LineagePulseObject-class html accessors html calcNormConst html calcPostDrop_Matrix html calcPostDrop_Vector html cash-LineagePulseObject-method html decompressDispByGene html decompressDispByGeneMM html decompressDropoutRateByCell html decompressDropoutRateByGene html decompressMeansByGene html decompressMuByGeneMM html evalDropoutModel html evalDropoutModel_comp html evalImpulseModel html evalImpulseModel_comp html evalLogLikGene html evalLogLikGeneMM html evalLogLikMatrix html evalLogLikMuDispGeneFit html evalLogLikMuDispGeneFit_comp html evalLogLikNB html evalLogLikNB_comp html evalLogLikPiZINB_ManyCells html evalLogLikPiZINB_ManyCells_comp html evalLogLikPiZINB_SingleCell html evalLogLikPiZINB_SingleCell_comp html evalLogLikZINB html evalLogLikZINB_comp html fitLPModels html fitModel html fitMuDisp html fitMuDispGene html fitMuDispGeneImpulse html fitMuDispGeneMM html fitPi html fitPi_ManyCells html fitPi_SingleCell html getFitsDispersion html getFitsDropout html getFitsMean html getNormData html getPostDrop html initDispModel html initDropModel html initMuModel html initialiseImpulseParameters html names-LineagePulseObject-method html plotCellDensity html plotGene html processSCData html runDEAnalysis html runLineagePulse html simulateContinuousDataSet html sortGeneTrajectories html sub-sub-LineagePulseObject-character-missing-method html testDropout html writeReport html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'LineagePulse' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'LineagePulse' as LineagePulse_1.14.0.zip * DONE (LineagePulse) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'LineagePulse' successfully unpacked and MD5 sums checked