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This page was generated on 2022-04-13 12:06:46 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for KEGGgraph on tokay2


To the developers/maintainers of the KEGGgraph package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/KEGGgraph.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 979/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
KEGGgraph 1.54.0  (landing page)
Jitao David Zhang
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/KEGGgraph
git_branch: RELEASE_3_14
git_last_commit: 135ee3d
git_last_commit_date: 2021-10-26 11:53:24 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: KEGGgraph
Version: 1.54.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/KEGGgraph_1.54.0.tar.gz && rm -rf KEGGgraph.buildbin-libdir && mkdir KEGGgraph.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=KEGGgraph.buildbin-libdir KEGGgraph_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL KEGGgraph_1.54.0.zip && rm KEGGgraph_1.54.0.tar.gz KEGGgraph_1.54.0.zip
StartedAt: 2022-04-12 04:36:23 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 04:38:31 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 127.9 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/KEGGgraph_1.54.0.tar.gz && rm -rf KEGGgraph.buildbin-libdir && mkdir KEGGgraph.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=KEGGgraph.buildbin-libdir KEGGgraph_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL KEGGgraph_1.54.0.zip && rm KEGGgraph_1.54.0.tar.gz KEGGgraph_1.54.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 63  929k   63  590k    0     0   632k      0  0:00:01 --:--:--  0:00:01  632k
100  929k  100  929k    0     0   756k      0  0:00:01  0:00:01 --:--:--  757k

install for i386

* installing *source* package 'KEGGgraph' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'KEGGgraph'
    finding HTML links ... done
    KEGGEdge-class                          html  
    KEGGEdgeSubType-class                   html  
    KEGGEdgeSubtype                         html  
    KEGGEdgeType                            html  
    KEGGGraphics-class                      html  
    KEGGGroup-class                         html  
    KEGGNode-class                          html  
    KEGGNodeType                            html  
    KEGGPATHID2NAME                         html  
    KEGGPathway-class                       html  
    KEGGPathwayInfo-class                   html  
    KEGGReaction-class                      html  
    KEGGpathway2Graph                       html  
    KEGGpathway2reactionGraph               html  
    expandKEGGNode                          html  
    expandKEGGPathway                       html  
    getDisplayName-methods                  html  
    getEntryID-methods                      html  
    getKEGGID-methods                       html  
    getKEGGgeneLink-methods                 html  
    getKEGGnodeData                         html  
    getKGMLurl                              html  
    getName-methods                         html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/KEGGgraph.buildbin-libdir/00LOCK-KEGGgraph/00new/KEGGgraph/help/getName+2CKEGGEdgeSubtype-method.html
    getNamedElement                         html  
    getPathwayInfo-methods                  html  
    getReactions-methods                    html  
    getRgraphvizEdgeNames                   html  
    getSubtype-methods                      html  
    getTitle-methods                        html  
    getType-methods                         html  
    getValue-methods                        html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/KEGGgraph.buildbin-libdir/00LOCK-KEGGgraph/00new/KEGGgraph/help/getValue+2CKEGGEdgeSubtype-method.html
    graphDensity                            html  
    isHomoList                              html  
    kgmlFileName2PathwayName                html  
    mergeGraphs                             html  
    mergeKEGGgraphs                         html  
    neighborhood                            html  
    parseEntry                              html  
    parseGraphics                           html  
    parseKGML                               html  
    parseKGML2DataFrame                     html  
    parseKGML2Graph                         html  
    parseKGMLexpandMaps                     html  
    parsePathwayInfo                        html  
    parseReaction                           html  
    parseRelation                           html  
    parseSubType                            html  
    plotKEGGgraph                           html  
    pvalue2asterisk                         html  
    queryKEGGsubgraph                       html  
    randomSubGraph                          html  
    splitKEGGgroup                          html  
    subGraphByNodeType                      html  
    subKEGGgraph                            html  
    subtypeDisplay-methods                  html  
    top                                     html  
    translateKEGGID2GeneID                  html  
    translateKEGGgraph                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'KEGGgraph' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'KEGGgraph' as KEGGgraph_1.54.0.zip
* DONE (KEGGgraph)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'KEGGgraph' successfully unpacked and MD5 sums checked