############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ISoLDE_1.22.0.tar.gz && rm -rf ISoLDE.buildbin-libdir && mkdir ISoLDE.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ISoLDE.buildbin-libdir ISoLDE_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ISoLDE_1.22.0.zip && rm ISoLDE_1.22.0.tar.gz ISoLDE_1.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 81 1256k 81 1024k 0 0 1151k 0 0:00:01 --:--:-- 0:00:01 1150k 100 1256k 100 1256k 0 0 1253k 0 0:00:01 0:00:01 --:--:-- 1253k install for i386 * installing *source* package 'ISoLDE' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Isolde.c -o Isolde.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o ISoLDE.dll tmp.def Isolde.o -fopenmp -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/ISoLDE.buildbin-libdir/00LOCK-ISoLDE/00new/ISoLDE/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ISoLDE' finding HTML links ... done ISoLDE-package html filterT html filteredASRcounts html isolde_test html normASRcounts html rawASRcounts html readNormInput html readRawInput html readTarget html target html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ISoLDE' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Isolde.c -o Isolde.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o ISoLDE.dll tmp.def Isolde.o -fopenmp -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/ISoLDE.buildbin-libdir/ISoLDE/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'ISoLDE' as ISoLDE_1.22.0.zip * DONE (ISoLDE) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'ISoLDE' successfully unpacked and MD5 sums checked