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This page was generated on 2022-04-13 12:05:23 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for GDCRNATools on nebbiolo2


To the developers/maintainers of the GDCRNATools package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GDCRNATools.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 709/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GDCRNATools 1.14.0  (landing page)
Ruidong Li
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/GDCRNATools
git_branch: RELEASE_3_14
git_last_commit: 9b69c00
git_last_commit_date: 2021-10-26 12:41:09 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: GDCRNATools
Version: 1.14.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GDCRNATools
StartedAt: 2022-04-12 04:35:10 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 04:36:12 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 62.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GDCRNATools
###
##############################################################################
##############################################################################


* checking for file ‘GDCRNATools/DESCRIPTION’ ... OK
* preparing ‘GDCRNATools’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GDCRNATools.Rmd’ using rmarkdown


Registered S3 method overwritten by 'ggtree':
  method      from 
  identify.gg ggfun
##############################################################################
Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.

The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
##############################################################################
Removed 0 samples
Removed 0 samples
Quitting from lines 110-125 (GDCRNATools.Rmd) 
Error: processing vignette 'GDCRNATools.Rmd' failed with diagnostics:
contrasts can be applied only to factors with 2 or more levels
--- failed re-building ‘GDCRNATools.Rmd’

--- re-building ‘index.Rmd’ using rmarkdown
--- finished re-building ‘index.Rmd’

SUMMARY: processing the following file failed:
  ‘GDCRNATools.Rmd’

Error: Vignette re-building failed.
Execution halted