############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/FamAgg_1.22.0.tar.gz && rm -rf FamAgg.buildbin-libdir && mkdir FamAgg.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FamAgg.buildbin-libdir FamAgg_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL FamAgg_1.22.0.zip && rm FamAgg_1.22.0.tar.gz FamAgg_1.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 240k 100 240k 0 0 441k 0 --:--:-- --:--:-- --:--:-- 441k 100 240k 100 240k 0 0 440k 0 --:--:-- --:--:-- --:--:-- 440k install for i386 * installing *source* package 'FamAgg' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'pedigree' in package 'FamAgg' in method for 'countGenerations' with signature '"pedigreeList"': no definition for class "pedigreeList" in method for 'countGenerations' with signature '"pedigree"': no definition for class "pedigree" in method for 'estimateGenerations' with signature '"pedigree"': no definition for class "pedigree" in method for 'estimateGenerations' with signature '"pedigreeList"': no definition for class "pedigreeList" in method for 'findFounders' with signature '"pedigreeList"': no definition for class "pedigreeList" in method for 'findFounders' with signature '"pedigreeList"': no definition for class "pedigreeList" in method for 'generationsFrom' with signature '"pedigree"': no definition for class "pedigree" in method for 'generationsFrom' with signature '"pedigreeList"': no definition for class "pedigreeList" in method for 'getAncestors' with signature '"pedigreeList"': no definition for class "pedigreeList" in method for 'getAncestors' with signature '"pedigree"': no definition for class "pedigree" in method for 'getChildren' with signature '"pedigreeList"': no definition for class "pedigreeList" in method for 'getChildren' with signature '"pedigree"': no definition for class "pedigree" in method for 'getCommonAncestor' with signature '"pedigree"': no definition for class "pedigree" in method for 'getCommonAncestor' with signature '"pedigreeList"': no definition for class "pedigreeList" in method for 'getMissingMate' with signature '"pedigreeList"': no definition for class "pedigreeList" in method for 'getMissingMate' with signature '"pedigree"': no definition for class "pedigree" in method for 'getSiblings' with signature '"pedigreeList"': no definition for class "pedigreeList" in method for 'getSiblings' with signature '"pedigree"': no definition for class "pedigree" in method for 'getAll' with signature '"pedigreeList"': no definition for class "pedigreeList" in method for 'getAll' with signature '"pedigree"': no definition for class "pedigree" in method for 'getExternalMatched' with signature '"pedigreeList"': no definition for class "pedigreeList" in method for 'getExternalMatched' with signature '"pedigree"': no definition for class "pedigree" in method for 'getGenerationMatched' with signature '"pedigreeList"': no definition for class "pedigreeList" in method for 'getGenerationMatched' with signature '"pedigree"': no definition for class "pedigree" in method for 'getGenerationSexMatched' with signature '"pedigreeList"': no definition for class "pedigreeList" in method for 'getGenerationSexMatched' with signature '"pedigree"': no definition for class "pedigree" in method for 'getSexMatched' with signature '"pedigreeList"': no definition for class "pedigreeList" in method for 'getSexMatched' with signature '"pedigree"': no definition for class "pedigree" ** help *** installing help indices converting help for package 'FamAgg' finding HTML links ... done FABinTestResults html FAData-analysis html FAData html FAGenIndexResults html FAIncidenceRateResults html FAKinGroupResults html FAKinSumResults html FAProbResults html FAStdIncidenceRateResults html Pedigree-utils html defineControls html kinshipPairs html plotting-functions html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'FamAgg' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'FamAgg' as FamAgg_1.22.0.zip * DONE (FamAgg) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'FamAgg' successfully unpacked and MD5 sums checked