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This page was generated on 2022-04-13 12:06:31 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for ERSSA on tokay2


To the developers/maintainers of the ERSSA package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ERSSA.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 603/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ERSSA 1.12.0  (landing page)
Zixuan Shao
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/ERSSA
git_branch: RELEASE_3_14
git_last_commit: d644e22
git_last_commit_date: 2021-10-26 12:46:52 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ERSSA
Version: 1.12.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ERSSA.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings ERSSA_1.12.0.tar.gz
StartedAt: 2022-04-12 19:24:26 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 19:33:27 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 540.8 seconds
RetCode: 0
Status:   OK  
CheckDir: ERSSA.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ERSSA.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings ERSSA_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/ERSSA.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ERSSA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ERSSA' version '1.12.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ERSSA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
erssa_deseq2          52.83   0.52   53.34
erssa_deseq2_parallel 52.98   0.11   53.10
erssa                 15.97   0.29   16.26
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
erssa_deseq2_parallel 68.67   0.11   68.78
erssa_deseq2          63.09   0.08   63.17
erssa                 15.50   0.15   15.66
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

ERSSA.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ERSSA_1.12.0.tar.gz && rm -rf ERSSA.buildbin-libdir && mkdir ERSSA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ERSSA.buildbin-libdir ERSSA_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ERSSA_1.12.0.zip && rm ERSSA_1.12.0.tar.gz ERSSA_1.12.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 23 2775k   23  641k    0     0   690k      0  0:00:04 --:--:--  0:00:04  690k
 79 2775k   79 2209k    0     0  1141k      0  0:00:02  0:00:01  0:00:01 1141k
100 2775k  100 2775k    0     0  1263k      0  0:00:02  0:00:02 --:--:-- 1264k

install for i386

* installing *source* package 'ERSSA' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ERSSA'
    finding HTML links ... done
    comb_gen                                html  
    combinations.partial                    html  
    condition_table.full                    html  
    condition_table.partial                 html  
    count_filter                            html  
    count_table.filtered.partial            html  
    count_table.full                        html  
    count_table.partial                     html  
    deg.partial                             html  
    erssa                                   html  
    erssa_deseq2                            html  
    erssa_deseq2_parallel                   html  
    erssa_edger                             html  
    erssa_edger_parallel                    html  
    ggplot2_TPR_FPRPlot                     html  
    ggplot2_dotplot                         html  
    ggplot2_intersectPlot                   html  
    ggplot2_marginPlot                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ERSSA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ERSSA' as ERSSA_1.12.0.zip
* DONE (ERSSA)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'ERSSA' successfully unpacked and MD5 sums checked

Tests output


Example timings

ERSSA.Rcheck/examples_i386/ERSSA-Ex.timings

nameusersystemelapsed
comb_gen0.020.000.01
count_filter0.010.000.02
erssa15.97 0.2916.26
erssa_deseq252.83 0.5253.34
erssa_deseq2_parallel52.98 0.1153.10
erssa_edger3.590.003.59
erssa_edger_parallel3.250.003.25
ggplot2_TPR_FPRPlot0.380.000.38
ggplot2_dotplot0.410.000.40
ggplot2_intersectPlot0.570.000.58
ggplot2_marginPlot0.470.010.49

ERSSA.Rcheck/examples_x64/ERSSA-Ex.timings

nameusersystemelapsed
comb_gen0.020.000.02
count_filter000
erssa15.50 0.1515.66
erssa_deseq263.09 0.0863.17
erssa_deseq2_parallel68.67 0.1168.78
erssa_edger3.950.003.95
erssa_edger_parallel2.960.022.97
ggplot2_TPR_FPRPlot0.370.010.39
ggplot2_dotplot0.440.000.44
ggplot2_intersectPlot0.470.000.47
ggplot2_marginPlot0.300.020.31