############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/DeepBlueR_1.20.0.tar.gz && rm -rf DeepBlueR.buildbin-libdir && mkdir DeepBlueR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DeepBlueR.buildbin-libdir DeepBlueR_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL DeepBlueR_1.20.0.zip && rm DeepBlueR_1.20.0.tar.gz DeepBlueR_1.20.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 34 523k 34 179k 0 0 641k 0 --:--:-- --:--:-- --:--:-- 641k 100 523k 100 523k 0 0 1037k 0 --:--:-- --:--:-- --:--:-- 1037k install for i386 Warning in untar2(tarfile, files, list, exdir, restore_times) : failed to copy 'DeepBlueR/vignettes/DeepBlueR.Rmd' to 'DeepBlueR/README.md' * installing *source* package 'DeepBlueR' ... ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading Called method: deepblue_list_column_types Reported status was: okay Called method: deepblue_info Reported status was: okay ** help *** installing help indices converting help for package 'DeepBlueR' finding HTML links ... done DeepBlueCommand-class html deepblue_aggregate html deepblue_batch_export_results html deepblue_binning html deepblue_cache_status html deepblue_cancel_request html deepblue_chromosomes html deepblue_clear_cache html deepblue_collection_experiments_count html deepblue_column_types html deepblue_commands html deepblue_convert_to_df html deepblue_convert_to_grange html deepblue_count_gene_ontology_terms html deepblue_count_regions html deepblue_coverage html deepblue_delete_request_from_cache html deepblue_diff html deepblue_distinct_column_values html deepblue_download_request_data-DeepBlueCommand-method html deepblue_download_request_data html deepblue_echo html deepblue_enrich_regions_fast html deepblue_enrich_regions_go_terms html deepblue_enrich_regions_overlap html deepblue_export_bed html deepblue_export_meta_data html deepblue_export_tab html deepblue_extend html deepblue_extract_ids html deepblue_extract_names html deepblue_faceting_experiments html deepblue_filter_regions html deepblue_find_motif html deepblue_flank html deepblue_format_object_size html deepblue_get_biosource_children html deepblue_get_biosource_parents html deepblue_get_biosource_related html deepblue_get_biosource_synonyms html deepblue_get_db html deepblue_get_experiments_by_query html deepblue_get_regions html deepblue_get_request_data html deepblue_info html deepblue_input_regions html deepblue_intersection html deepblue_is_biosource html deepblue_liftover html deepblue_list_annotations html deepblue_list_biosources html deepblue_list_cached_requests html deepblue_list_column_types html deepblue_list_epigenetic_marks html deepblue_list_experiments html deepblue_list_expressions html deepblue_list_gene_models html deepblue_list_genes html deepblue_list_genomes html deepblue_list_in_use html deepblue_list_projects html deepblue_list_recent_experiments html deepblue_list_requests html deepblue_list_samples html deepblue_list_similar_biosources html deepblue_list_similar_epigenetic_marks html deepblue_list_similar_experiments html deepblue_list_similar_genomes html deepblue_list_similar_projects html deepblue_list_similar_techniques html deepblue_list_techniques html deepblue_merge_queries html deepblue_meta_data_to_table html deepblue_name_to_id html deepblue_options html deepblue_overlap html deepblue_parse_gtf html deepblue_preview_experiment html deepblue_query_cache html deepblue_query_experiment_type html deepblue_reset_options html deepblue_score_matrix html deepblue_search html deepblue_select_annotations html deepblue_select_column html deepblue_select_experiments html deepblue_select_expressions html deepblue_select_genes html deepblue_select_regions html deepblue_switch_get_request_data html deepblue_tiling_regions html deepblue_wait_request html show-DeepBlueCommand-method html xml.rpc html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 Warning in untar2(tarfile, files, list, exdir, restore_times) : failed to copy 'DeepBlueR/vignettes/DeepBlueR.Rmd' to 'DeepBlueR/README.md' * installing *source* package 'DeepBlueR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'DeepBlueR' as DeepBlueR_1.20.0.zip * DONE (DeepBlueR) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'DeepBlueR' successfully unpacked and MD5 sums checked