Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:28 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for DMRcate on tokay2


To the developers/maintainers of the DMRcate package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DMRcate.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 526/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DMRcate 2.8.5  (landing page)
Tim Peters
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/DMRcate
git_branch: RELEASE_3_14
git_last_commit: c65dc79
git_last_commit_date: 2022-02-07 00:17:31 -0400 (Mon, 07 Feb 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    ERROR    OK  
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: DMRcate
Version: 2.8.5
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/DMRcate_2.8.5.tar.gz && rm -rf DMRcate.buildbin-libdir && mkdir DMRcate.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DMRcate.buildbin-libdir DMRcate_2.8.5.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL DMRcate_2.8.5.zip && rm DMRcate_2.8.5.tar.gz DMRcate_2.8.5.zip
StartedAt: 2022-04-12 07:18:59 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 07:20:49 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 109.2 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/DMRcate_2.8.5.tar.gz && rm -rf DMRcate.buildbin-libdir && mkdir DMRcate.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DMRcate.buildbin-libdir DMRcate_2.8.5.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL DMRcate_2.8.5.zip && rm DMRcate_2.8.5.tar.gz DMRcate_2.8.5.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 63260  100 63260    0     0   114k      0 --:--:-- --:--:-- --:--:--  114k
100 63260  100 63260    0     0   114k      0 --:--:-- --:--:-- --:--:--  114k

install for i386

* installing *source* package 'DMRcate' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DMRcate'
    finding HTML links ... done
    CpGannotated-class                      html  
    DMR.plot                                html  
    DMRcate-internal                        html  
    DMRcate-package                         html  
    DMResults-class                         html  
    changeFDR                               html  
    cpg.annotate                            html  
    dmrcate                                 html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/DMRcate.buildbin-libdir/00LOCK-DMRcate/00new/DMRcate/help/dmrcate.html
    extractRanges                           html  
    rmSNPandCH                              html  
    sequencing.annotate                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DMRcate' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DMRcate' as DMRcate_2.8.5.zip
* DONE (DMRcate)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'DMRcate' successfully unpacked and MD5 sums checked