############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CoCiteStats.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings CoCiteStats_1.66.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/CoCiteStats.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'CoCiteStats/DESCRIPTION' ... OK * this is package 'CoCiteStats' version '1.66.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'CoCiteStats' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Title field: should not end in a period. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: 'org.Hs.eg.db' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE gene.geneslist.sig: no visible global function definition for 'Lkeys' gene.geneslist.sig: no visible binding for global variable 'org.Hs.egPMID' paperLen: no visible global function definition for 'toTable' paperLen: no visible binding for global variable 'org.Hs.egPMID' paperLen: no visible global function definition for 'nhit' paperLen: no visible global function definition for 'revmap' Undefined global functions or variables: Lkeys nhit org.Hs.egPMID revmap toTable * checking Rd files ... NOTE prepare_Rd: gene.geneslist.statistic.Rd:19-21: Dropping empty section \details * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed actorAdjTable 20.97 7.39 30.84 gene.geneslist.sig 21.83 0.08 21.91 gene.geneslist.statistic 15.17 0.07 15.24 gene.gene.statistic 14.03 0.26 14.30 twTStats 14.17 0.02 14.19 twowayTable 14.17 0.00 14.17 paperLen 13.22 0.10 13.32 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed actorAdjTable 19.91 6.29 26.20 gene.geneslist.sig 20.40 0.13 20.53 gene.gene.statistic 13.68 0.06 13.75 gene.geneslist.statistic 13.33 0.23 13.56 twowayTable 13.39 0.09 13.49 paperLen 12.94 0.08 13.02 twTStats 12.94 0.08 13.01 * checking PDF version of manual ... OK * DONE Status: 4 NOTEs See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/CoCiteStats.Rcheck/00check.log' for details.