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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/Clonality_1.42.0.tar.gz && rm -rf Clonality.buildbin-libdir && mkdir Clonality.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Clonality.buildbin-libdir Clonality_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL Clonality_1.42.0.zip && rm Clonality_1.42.0.tar.gz Clonality_1.42.0.zip
###
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install for i386

* installing *source* package 'Clonality' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Clonality'
    finding HTML links ... done
    Clonality-internal                      html  
    Clonality-package                       html  
    ECMtesting                              html  
    LOHclonality                            html  
    LRtesting3or4tumors                     html  
    SNVtest                                 html  
    SNVtest2                                html  
    ave.adj.probes                          html  
    chromosomePlots                         html  
    clonEM                                  html  
    clonality.analysis                      html  
    create.mutation.matrix                  html  
    freqdata                                html  
    genomewidePlots                         html  
    get.mutation.frequencies                html  
    grid.lik                                html  
    histogramPlot                           html  
    lcis                                    html  
    model.lik                               html  
    mutation.proba                          html  
    mutation.rem                            html  
    print.mutation.proba                    html  
    print.mutation.rem                      html  
    splitChromosomes                        html  
    xidens                                  html  
** building package indices
** installing vignettes
   'Clonality.Rnw' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Clonality' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Clonality' as Clonality_1.42.0.zip
* DONE (Clonality)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'Clonality' successfully unpacked and MD5 sums checked