############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CellTrails_1.12.0.tar.gz && rm -rf CellTrails.buildbin-libdir && mkdir CellTrails.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CellTrails.buildbin-libdir CellTrails_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CellTrails_1.12.0.zip && rm CellTrails_1.12.0.tar.gz CellTrails_1.12.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 6 2180k 6 144k 0 0 430k 0 0:00:05 --:--:-- 0:00:05 429k 56 2180k 56 1231k 0 0 923k 0 0:00:02 0:00:01 0:00:01 923k 100 2180k 100 2180k 0 0 1177k 0 0:00:01 0:00:01 --:--:-- 1177k install for i386 * installing *source* package 'CellTrails' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CellTrails' finding HTML links ... done addTrail html connectStates html contrastTrailExpr html dot-adjustLayoutByPtime html dot-bhtsne html dot-capitalize html dot-color_hue html dot-color_ramp html dot-connectStates_def html dot-connect_ordi html dot-connect_ortho html dot-contrastExprTrail_def html dot-deleteMedianCentres html dot-denoiseExpression html dot-diffExpr html dot-diffExprState_def html dot-embedSamples_def html dot-exprs html dot-featureNameExists html dot-filterTrajFeaturesByCOV_def html dot-filterTrajFeaturesByDL_def html dot-filterTrajFeaturesByFF_def html dot-findSpectrum_def html dot-findStates_def html dot-fitDynamic_def html dot-fitTrajectory_def html dot-fit_surface html dot-fr_layout html dot-generate_ordination html dot-ihs html dot-linear_fit html dot-needsToBeExpanded html dot-nn_impute html dot-pca_def html dot-pheno html dot-phenoNameExists html dot-plotDynamic html dot-plotManifold_def html dot-plotSpectrum_def html dot-plotStateExpression_def html dot-plotStateSize_def html dot-plotStateTrajectory_def html dot-plotTrail_def html dot-plotTrailblazing_def html dot-plot_trajectoryFit html dot-prettyColorRamp html dot-prettyString html dot-project_ortho html dot-rbf html dot-rescale html dot-sampleNameExists html dot-spanForest-set html dot-spanForest html dot-spatmed html dot-stateTrajLayout html dot-trailNameExists html dot-trajGraph-set html dot-trajGraph html dot-trajLandmark-set html dot-trajLandmark html dot-trajResiduals-set html dot-useFeature-set html dot-useFeature html dot-useSample-set html dot-useSample html dot-validatePlotParams html dot-write_ygraphml_def html embedSamples html enrichment.test html exSCE html featureNames-SingleCellExperiment-method html filterTrajFeaturesByCOV html filterTrajFeaturesByDL html filterTrajFeaturesByFF html findSpectrum html findStates html fitDynamic html fitTrajectory html landmarks html latentSpace-set html latentSpace html manifold2D-set html manifold2D html pca html phenoNames html plotDynamic html plotManifold html plotMap html plotStateExpression html plotStateSize html plotStateTrajectory html plotTrail html plotTrajectoryFit html read.ygraphml html removeTrail html sampleNames-SingleCellExperiment-method html selectTrajectory html showTrajInfo html simulate_exprs html stateTrajLayout-set html states-set html states html trailNames-set html trailNames html trails html trajComponents html trajFeatureNames-set html trajFeatureNames html trajLayout-set html trajLayout html trajResiduals html trajSampleNames html userLandmarks-set html userLandmarks html write.ygraphml html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CellTrails' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'CellTrails' as CellTrails_1.12.0.zip * DONE (CellTrails) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'CellTrails' successfully unpacked and MD5 sums checked