############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CNVgears_1.2.0.tar.gz && rm -rf CNVgears.buildbin-libdir && mkdir CNVgears.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVgears.buildbin-libdir CNVgears_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CNVgears_1.2.0.zip && rm CNVgears_1.2.0.tar.gz CNVgears_1.2.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 7 2112k 7 148k 0 0 565k 0 0:00:03 --:--:-- 0:00:03 565k 73 2112k 73 1547k 0 0 1225k 0 0:00:01 0:00:01 --:--:-- 1225k 100 2112k 100 2112k 0 0 1383k 0 0:00:01 0:00:01 --:--:-- 1383k install for i386 * installing *source* package 'CNVgears' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CNVgears' finding HTML links ... done CNVgears html CNVresults_to_GRanges html chr_uniform html cleaning_filter html cnmops_to_CNVresults html cnvrs_create html cnvs_inheritance html cohort_examples html genic_load html genomic_locus html hg18_chr_arms html hg18_start_end_centromeres html hg19_chr_arms html hg19_start_end_centromeres html hg38_chr_arms html hg38_start_end_centromeres html immuno_regions html inter_res_merge html lrr_trio_plot html markers_examples html merge_calls html penn_22 html quanti_22 html read_NGS_intervals html read_NGS_raw html read_finalreport_raw html read_finalreport_snps html read_metadt html read_results html read_vcf html summary.CNVresults html telom_centrom html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CNVgears' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'CNVgears' as CNVgears_1.2.0.zip * DONE (CNVgears) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'CNVgears' successfully unpacked and MD5 sums checked