############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BubbleTree_2.24.0.tar.gz && rm -rf BubbleTree.buildbin-libdir && mkdir BubbleTree.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BubbleTree.buildbin-libdir BubbleTree_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BubbleTree_2.24.0.zip && rm BubbleTree_2.24.0.tar.gz BubbleTree_2.24.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 2 23.7M 2 593k 0 0 884k 0 0:00:27 --:--:-- 0:00:27 883k 9 23.7M 9 2333k 0 0 1397k 0 0:00:17 0:00:01 0:00:16 1397k 18 23.7M 18 4492k 0 0 1683k 0 0:00:14 0:00:02 0:00:12 1683k 27 23.7M 27 6619k 0 0 1805k 0 0:00:13 0:00:03 0:00:10 1805k 39 23.7M 39 9664k 0 0 2071k 0 0:00:11 0:00:04 0:00:07 2071k 56 23.7M 56 13.3M 0 0 2407k 0 0:00:10 0:00:05 0:00:05 2611k 69 23.7M 69 16.3M 0 0 2517k 0 0:00:09 0:00:06 0:00:03 2891k 80 23.7M 80 19.0M 0 0 2542k 0 0:00:09 0:00:07 0:00:02 3000k 90 23.7M 90 21.5M 0 0 2545k 0 0:00:09 0:00:08 0:00:01 3086k 100 23.7M 100 23.7M 0 0 2610k 0 0:00:09 0:00:09 --:--:-- 3150k install for i386 * installing *source* package 'BubbleTree' ... ** using staged installation It is recommended to use 'given' instead of 'middle'. ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'BubbleTree' finding HTML links ... done Annotate html BTreePlotter html BTreePredictor html RBD html RscoreTrack html TrackPlotter html all.somatic.lst html allCNV.lst html allCall.lst html allHetero.lst html allRBD.lst html annoByGenesAndCyto html bafTrack html btcompare html btpredict html cancer.genes.minus2 html centromere.dat html cnv.gr html cyto.gr html drawBTree html drawBubbles html drawFeatures html gene.uni.clean.gr html getTracks html heteroLociTrack html hg19.seqinfo html info html loadRBD html makeRBD html mergeSnpCnv html saveXLS html snp.gr html trackBTree html vol.genes html xyTrack html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'BubbleTree' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'BubbleTree' as BubbleTree_2.24.0.zip * DONE (BubbleTree) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'BubbleTree' successfully unpacked and MD5 sums checked