############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BAGS_2.34.0.tar.gz && rm -rf BAGS.buildbin-libdir && mkdir BAGS.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BAGS.buildbin-libdir BAGS_2.34.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BAGS_2.34.0.zip && rm BAGS_2.34.0.tar.gz BAGS_2.34.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 96183 100 96183 0 0 491k 0 --:--:-- --:--:-- --:--:-- 494k install for i386 * installing *source* package 'BAGS' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c BAGS.c -o BAGS.o In file included from BAGS.c:8: FuncionesFast-Final.h: In function 'BetaFunCSDiff2': FuncionesFast-Final.h:145:70: warning: unused variable 'YMu1' [-Wunused-variable] double media1,media,varianza1,varianza,resultado,varaux0,varaux1,YMu1; ^~~~ FuncionesFast-Final.h: In function 'AlfaFunCS': FuncionesFast-Final.h:166:105: warning: unused variable 'MediaDiff' [-Wunused-variable] double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff; ^~~~~~~~~ FuncionesFast-Final.h:166:94: warning: unused variable 'A' [-Wunused-variable] double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff; ^ FuncionesFast-Final.h:166:92: warning: unused variable 'C' [-Wunused-variable] double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff; ^ BAGS.c: In function 'Gibbs5': BAGS.c:25:48: warning: unused variable 'resI' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; ^~~~ BAGS.c:25:43: warning: unused variable 'rate' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; ^~~~ BAGS.c:25:36: warning: unused variable 'escala' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; ^~~~~~ BAGS.c:25:28: warning: unused variable 'escala3' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; ^~~~~~~ BAGS.c:25:20: warning: unused variable 'escala2' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; ^~~~~~~ BAGS.c:25:12: warning: unused variable 'escala1' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; ^~~~~~~ BAGS.c:24:12: warning: unused variable 'formaAux' [-Wunused-variable] double formaAux; ^~~~~~~~ BAGS.c:18:80: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable] double ResRho1,ResRho2,ResRho3,ResRho4,ResSgmA1,ResSgmA2,ResSgmA3,ResSgmA4,ResSgmA; ^~~~~~~ BAGS.c:15:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable] double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2; ^~~~ BAGS.c: In function 'Gibbs4': BAGS.c:342:48: warning: unused variable 'resI' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~ BAGS.c:342:43: warning: unused variable 'rate' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~ BAGS.c:342:36: warning: unused variable 'escala' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~ BAGS.c:342:28: warning: unused variable 'escala3' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~~ BAGS.c:342:20: warning: unused variable 'escala2' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~~ BAGS.c:342:12: warning: unused variable 'escala1' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~~ BAGS.c:341:12: warning: unused variable 'formaAux' [-Wunused-variable] double formaAux; ^~~~~~~~ BAGS.c:335:63: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable] double ResRho1,ResRho2,ResRho3,ResSgmA1,ResSgmA2,ResSgmA3,ResSgmA; ^~~~~~~ BAGS.c:332:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable] double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2; ^~~~ BAGS.c: In function 'Gibbs3': BAGS.c:593:48: warning: unused variable 'resI' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~ BAGS.c:593:43: warning: unused variable 'rate' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~ BAGS.c:593:36: warning: unused variable 'escala' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~ BAGS.c:593:28: warning: unused variable 'escala3' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~~ BAGS.c:593:20: warning: unused variable 'escala2' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~~ BAGS.c:593:12: warning: unused variable 'escala1' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~~ BAGS.c:592:12: warning: unused variable 'formaAux' [-Wunused-variable] double formaAux; ^~~~~~~~ BAGS.c:586:46: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable] double ResRho1,ResRho2,ResSgmA1,ResSgmA2,ResSgmA; ^~~~~~~ BAGS.c:583:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable] double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2; ^~~~ BAGS.c: In function 'Gibbs2': BAGS.c:786:48: warning: unused variable 'resI' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~ BAGS.c:786:43: warning: unused variable 'rate' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~ BAGS.c:786:36: warning: unused variable 'escala' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~ BAGS.c:786:28: warning: unused variable 'escala3' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~~ BAGS.c:786:20: warning: unused variable 'escala2' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~~ BAGS.c:786:12: warning: unused variable 'escala1' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~~ BAGS.c:785:12: warning: unused variable 'formaAux' [-Wunused-variable] double formaAux; ^~~~~~~~ BAGS.c:779:29: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable] double ResRho1,ResSgmA1,ResSgmA; ^~~~~~~ BAGS.c:776:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable] double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2; ^~~~ C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o BAGS.dll tmp.def BAGS.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BAGS.buildbin-libdir/00LOCK-BAGS/00new/BAGS/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'BAGS' finding HTML links ... done AnnotationMFGO html BAGS-internal html BAGS-package html DataGeneSets html Gibbs2 html Gibbs3 html Gibbs4 html Gibbs5 html MCMCDataSet html ReadGMT html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'BAGS' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c BAGS.c -o BAGS.o In file included from BAGS.c:8: FuncionesFast-Final.h: In function 'BetaFunCSDiff2': FuncionesFast-Final.h:145:70: warning: unused variable 'YMu1' [-Wunused-variable] double media1,media,varianza1,varianza,resultado,varaux0,varaux1,YMu1; ^~~~ FuncionesFast-Final.h: In function 'AlfaFunCS': FuncionesFast-Final.h:166:105: warning: unused variable 'MediaDiff' [-Wunused-variable] double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff; ^~~~~~~~~ FuncionesFast-Final.h:166:94: warning: unused variable 'A' [-Wunused-variable] double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff; ^ FuncionesFast-Final.h:166:92: warning: unused variable 'C' [-Wunused-variable] double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff; ^ BAGS.c: In function 'Gibbs5': BAGS.c:25:48: warning: unused variable 'resI' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; ^~~~ BAGS.c:25:43: warning: unused variable 'rate' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; ^~~~ BAGS.c:25:36: warning: unused variable 'escala' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; ^~~~~~ BAGS.c:25:28: warning: unused variable 'escala3' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; ^~~~~~~ BAGS.c:25:20: warning: unused variable 'escala2' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; ^~~~~~~ BAGS.c:25:12: warning: unused variable 'escala1' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; ^~~~~~~ BAGS.c:24:12: warning: unused variable 'formaAux' [-Wunused-variable] double formaAux; ^~~~~~~~ BAGS.c:18:80: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable] double ResRho1,ResRho2,ResRho3,ResRho4,ResSgmA1,ResSgmA2,ResSgmA3,ResSgmA4,ResSgmA; ^~~~~~~ BAGS.c:15:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable] double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2; ^~~~ BAGS.c: In function 'Gibbs4': BAGS.c:342:48: warning: unused variable 'resI' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~ BAGS.c:342:43: warning: unused variable 'rate' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~ BAGS.c:342:36: warning: unused variable 'escala' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~ BAGS.c:342:28: warning: unused variable 'escala3' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~~ BAGS.c:342:20: warning: unused variable 'escala2' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~~ BAGS.c:342:12: warning: unused variable 'escala1' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~~ BAGS.c:341:12: warning: unused variable 'formaAux' [-Wunused-variable] double formaAux; ^~~~~~~~ BAGS.c:335:63: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable] double ResRho1,ResRho2,ResRho3,ResSgmA1,ResSgmA2,ResSgmA3,ResSgmA; ^~~~~~~ BAGS.c:332:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable] double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2; ^~~~ BAGS.c: In function 'Gibbs3': BAGS.c:593:48: warning: unused variable 'resI' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~ BAGS.c:593:43: warning: unused variable 'rate' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~ BAGS.c:593:36: warning: unused variable 'escala' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~ BAGS.c:593:28: warning: unused variable 'escala3' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~~ BAGS.c:593:20: warning: unused variable 'escala2' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~~ BAGS.c:593:12: warning: unused variable 'escala1' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~~ BAGS.c:592:12: warning: unused variable 'formaAux' [-Wunused-variable] double formaAux; ^~~~~~~~ BAGS.c:586:46: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable] double ResRho1,ResRho2,ResSgmA1,ResSgmA2,ResSgmA; ^~~~~~~ BAGS.c:583:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable] double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2; ^~~~ BAGS.c: In function 'Gibbs2': BAGS.c:786:48: warning: unused variable 'resI' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~ BAGS.c:786:43: warning: unused variable 'rate' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~ BAGS.c:786:36: warning: unused variable 'escala' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~ BAGS.c:786:28: warning: unused variable 'escala3' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~~ BAGS.c:786:20: warning: unused variable 'escala2' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~~ BAGS.c:786:12: warning: unused variable 'escala1' [-Wunused-variable] double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda ^~~~~~~ BAGS.c:785:12: warning: unused variable 'formaAux' [-Wunused-variable] double formaAux; ^~~~~~~~ BAGS.c:779:29: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable] double ResRho1,ResSgmA1,ResSgmA; ^~~~~~~ BAGS.c:776:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable] double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2; ^~~~ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o BAGS.dll tmp.def BAGS.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BAGS.buildbin-libdir/BAGS/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'BAGS' as BAGS_2.34.0.zip * DONE (BAGS) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'BAGS' successfully unpacked and MD5 sums checked