############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r ArrayExpress -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ArrayExpress ### ############################################################################## ############################################################################## * checking for file 'ArrayExpress/DESCRIPTION' ... OK * preparing 'ArrayExpress': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'ArrayExpress.Rnw' using Sweave Loading required package: Biobase Loading required package: BiocGenerics Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- 0:00:17 --:--:-- 0 curl: (35) error:14095126:SSL routines:ssl3_read_n:unexpected eof while reading Error in download.file(qr, queryfilename, mode = "wb", method = "curl") : 'curl' call had nonzero exit status Error: processing vignette 'ArrayExpress.Rnw' failed with diagnostics: chunk 1 (label = queryAE) Error : XML content does not seem to be XML: '' --- failed re-building 'ArrayExpress.Rnw' SUMMARY: processing the following file failed: 'ArrayExpress.Rnw' Error: Vignette re-building failed. Execution halted