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This page was generated on 2021-10-16 15:58:41 -0400 (Sat, 16 Oct 2021).

CHECK results for KEGGdzPathwaysGEO on malbec2

To the developers/maintainers of the KEGGdzPathwaysGEO package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 199/406HostnameOS / ArchINSTALLBUILDCHECK
KEGGdzPathwaysGEO 1.30.0  (landing page)
Gaurav Bhatti
Snapshot Date: 2021-10-16 09:30:07 -0400 (Sat, 16 Oct 2021)
git_url: https://git.bioconductor.org/packages/KEGGdzPathwaysGEO
git_branch: RELEASE_3_13
git_last_commit: cc8de0e
git_last_commit_date: 2021-05-19 11:35:17 -0400 (Wed, 19 May 2021)
malbec2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: KEGGdzPathwaysGEO
Version: 1.30.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:KEGGdzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings KEGGdzPathwaysGEO_1.30.0.tar.gz
StartedAt: 2021-10-16 13:25:45 -0400 (Sat, 16 Oct 2021)
EndedAt: 2021-10-16 13:30:49 -0400 (Sat, 16 Oct 2021)
EllapsedTime: 304.0 seconds
RetCode: 0
Status:   OK  
CheckDir: KEGGdzPathwaysGEO.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:KEGGdzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings KEGGdzPathwaysGEO_1.30.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGdzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGdzPathwaysGEO’ version ‘1.30.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .git_fetch_output.txt
  .git_merge_output.txt
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGdzPathwaysGEO’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 300.8Mb
  sub-directories of 1Mb or more:
    data  300.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘Biobase’ ‘BiocGenerics’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.13-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck/00check.log’
for details.



Installation output

KEGGdzPathwaysGEO.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL KEGGdzPathwaysGEO
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘KEGGdzPathwaysGEO’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (KEGGdzPathwaysGEO)

Tests output


Example timings

KEGGdzPathwaysGEO.Rcheck/KEGGdzPathwaysGEO-Ex.timings

nameusersystemelapsed
GSE12970.0520.0080.060
GSE147620.1230.0040.127
GSE154710.2920.0000.292
GSE165150.1520.0080.160
GSE188420.3340.0360.370
GSE191880.6170.0240.641
GSE197280.1260.0000.126
GSE201530.1010.0080.109
GSE202910.0660.0080.074
GSE213540.1070.0040.111
GSE34670.1070.0040.111
GSE35850.0390.0000.039
GSE36780.1050.0000.105
GSE41070.1260.0040.130
GSE5281_EC0.1220.0040.127
GSE5281_HIP0.1300.0040.134
GSE5281_VCX0.1610.0040.165
GSE6956AA0.0370.0000.037
GSE6956C0.0790.0040.083
GSE7810.0440.0000.044
GSE86710.2530.0120.265
GSE87620.1280.0000.128
GSE93480.3140.0160.330
GSE94760.1050.0040.109
KEGGdzPathwaysGEO-package0.3150.0080.342