Back to Build/check report for BioC 3.13 experimental data
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

This page was generated on 2021-10-16 15:58:40 -0400 (Sat, 16 Oct 2021).

CHECK results for GenomicDistributionsData on malbec2

To the developers/maintainers of the GenomicDistributionsData package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 146/406HostnameOS / ArchINSTALLBUILDCHECK
GenomicDistributionsData 1.0.0  (landing page)
Kristyna Kupkova
Snapshot Date: 2021-10-16 09:30:07 -0400 (Sat, 16 Oct 2021)
git_url: https://git.bioconductor.org/packages/GenomicDistributionsData
git_branch: RELEASE_3_13
git_last_commit: ad9d50c
git_last_commit_date: 2021-05-19 12:11:22 -0400 (Wed, 19 May 2021)
malbec2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GenomicDistributionsData
Version: 1.0.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:GenomicDistributionsData.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings GenomicDistributionsData_1.0.0.tar.gz
StartedAt: 2021-10-16 13:16:00 -0400 (Sat, 16 Oct 2021)
EndedAt: 2021-10-16 13:20:49 -0400 (Sat, 16 Oct 2021)
EllapsedTime: 288.5 seconds
RetCode: 0
Status:   OK  
CheckDir: GenomicDistributionsData.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:GenomicDistributionsData.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings GenomicDistributionsData_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/GenomicDistributionsData.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GenomicDistributionsData/DESCRIPTION’ ... OK
* this is package ‘GenomicDistributionsData’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .travis.yml
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GenomicDistributionsData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.13-data-experiment/meat/GenomicDistributionsData.Rcheck/00check.log’
for details.



Installation output

GenomicDistributionsData.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL GenomicDistributionsData
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘GenomicDistributionsData’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
snapshotDate(): 2021-05-18
** testing if installed package can be loaded from final location
snapshotDate(): 2021-05-18
** testing if installed package keeps a record of temporary installation path
* DONE (GenomicDistributionsData)

Tests output


Example timings

GenomicDistributionsData.Rcheck/GenomicDistributionsData-Ex.timings

nameusersystemelapsed
GenomicDistributionsData000
TSS_hg193.9310.1604.375
TSS_hg382.2160.0292.448
TSS_mm102.2100.0072.409
TSS_mm92.1690.0122.371
buildChromSizes000
buildGeneModels000
buildOpenSignalMatrix000
buildTSS000
chromSizes_hg192.0930.0252.340
chromSizes_hg382.0800.0082.303
chromSizes_mm101.9740.0202.178
chromSizes_mm92.0220.0162.238
geneModels_hg192.3090.0122.572
geneModels_hg382.3570.0242.604
geneModels_mm102.3450.0162.558
geneModels_mm92.5680.0162.787
loadBSgenome000
loadEnsDb000
loadTxDb0.0000.0000.001
openSignalMatrix_hg19000
openSignalMatrix_hg380.0000.0000.001
openSignalMatrix_mm10000