############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:DAPARdata.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings DAPARdata_1.22.2.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/DAPARdata.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘DAPARdata/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘DAPARdata’ version ‘1.22.2’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DAPARdata’ can be installed ... OK * checking installed package size ... NOTE installed size is 55.5Mb sub-directories of 1Mb or more: data 13.0Mb extdata 41.7Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress Exp1_R25_pept.RData 2.8Mb 1.6Mb xz Exp1_R25_prot.RData 1.2Mb 637Kb xz Exp1_R2_pept.RData 2.4Mb 1.3Mb xz Exp1_R2_prot.RData 1.2Mb 656Kb xz Exp2_R100_pept.RData 1.2Mb 723Kb xz Exp2_R100_prot.RData 586Kb 282Kb xz Exp2_R10_pept.RData 1.2Mb 704Kb xz Exp2_R10_prot.RData 592Kb 286Kb xz Exp2_R2_pept.RData 1.1Mb 651Kb xz Exp2_R2_prot.RData 591Kb 278Kb xz * checking installed files from ‘inst/doc’ ... OK * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 2 NOTEs See ‘/home/biocbuild/bbs-3.13-data-experiment/meat/DAPARdata.Rcheck/00check.log’ for details.