Back to Long Tests report for BioC 3.13

CHECK report for biodbKegg on rex3

This page was generated on 2021-12-11 17:30:01 -0500 (Sat, 11 Dec 2021).

To the developers/maintainers of the biodbKegg package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 7/20HostnameOS / ArchCHECK
biodbKegg 1.1.0  (landing page)
Pierrick Roger
Snapshot Date: 2021-12-11 09:00:01 -0500 (Sat, 11 Dec 2021)
URL: https://git.bioconductor.org/packages/biodbKegg
Branch: master
Last Commit: 2b7d004
Last Changed Date: 2021-10-26 13:13:42 -0500 (Tue, 26 Oct 2021)
rex3Linux (Ubuntu 20.04.2 LTS) / x86_64  OK  

Summary

Package: biodbKegg
Version: 1.1.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbKegg_1.1.0.tar.gz
StartedAt: 2021-12-11 09:30:25 -0500 (Sat, 11 Dec 2021)
EndedAt: 2021-12-11 09:32:51 -0500 (Sat, 11 Dec 2021)
EllapsedTime: 145.5 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbKegg.Rcheck
Warnings: 0

Tests output

biodbKegg.Rcheck/tests/testthat.Rout


R Under development (unstable) (2021-02-10 r79979) -- "Unsuffered Consequences"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbKegg)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> test_check("biodbKegg")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1831 ]
> 
> proc.time()
   user  system elapsed 
 45.854   1.861 110.144 

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbKegg_1.1.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodbKegg.Rcheck’
* using R Under development (unstable) (2021-02-10 r79979)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbKegg/DESCRIPTION’ ... OK
* this is package ‘biodbKegg’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbKegg’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: OK


Installation output

biodbKegg.Rcheck/00install.out

* installing *source* package ‘biodbKegg’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbKegg)