Back to Long Tests report for BioC 3.13

CHECK report for biodb on rex3

This page was generated on 2021-12-11 17:30:01 -0500 (Sat, 11 Dec 2021).

To the developers/maintainers of the biodb package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 4/20HostnameOS / ArchCHECK
biodb 1.3.1  (landing page)
Pierrick Roger
Snapshot Date: 2021-12-11 09:00:01 -0500 (Sat, 11 Dec 2021)
URL: https://git.bioconductor.org/packages/biodb
Branch: master
Last Commit: 3feaca0
Last Changed Date: 2021-12-10 11:23:24 -0500 (Fri, 10 Dec 2021)
rex3Linux (Ubuntu 20.04.2 LTS) / x86_64  OK  

Summary

Package: biodb
Version: 1.3.1
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodb_1.3.1.tar.gz
StartedAt: 2021-12-11 09:30:25 -0500 (Sat, 11 Dec 2021)
EndedAt: 2021-12-11 09:33:34 -0500 (Sat, 11 Dec 2021)
EllapsedTime: 188.3 seconds
RetCode: 0
Status:   OK  
CheckDir: biodb.Rcheck
Warnings: 0

Tests output

biodb.Rcheck/tests/testthat.Rout


R Under development (unstable) (2021-02-10 r79979) -- "Unsuffered Consequences"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodb")
biodb.INFO [2021-12-11 09:31:55.614][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.3.1.
biodb.DEBUG[2021-12-11 09:31:55.617][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/biodb/definitions.yml".
biodb.DEBUG[2021-12-11 09:31:55.621][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2021-12-11 09:31:55.622][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2021-12-11 09:31:55.623][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2021-12-11 09:31:55.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.626][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2021-12-11 09:31:55.642][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2021-12-11 09:31:55.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.645][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2021-12-11 09:31:55.646][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2021-12-11 09:31:55.646][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.667][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2021-12-11 09:31:55.668][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2021-12-11 09:31:55.669][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2021-12-11 09:31:55.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.672][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2021-12-11 09:31:55.672][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2021-12-11 09:31:55.673][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2021-12-11 09:31:55.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.676][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2021-12-11 09:31:55.677][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2021-12-11 09:31:55.677][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.679][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2021-12-11 09:31:55.680][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2021-12-11 09:31:55.681][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2021-12-11 09:31:55.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.684][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2021-12-11 09:31:55.684][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2021-12-11 09:31:55.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.687][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2021-12-11 09:31:55.688][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2021-12-11 09:31:55.689][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2021-12-11 09:31:55.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.691][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2021-12-11 09:31:55.692][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2021-12-11 09:31:55.693][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2021-12-11 09:31:55.693][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2021-12-11 09:31:55.694][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2021-12-11 09:31:55.695][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2021-12-11 09:31:55.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.698][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2021-12-11 09:31:55.698][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2021-12-11 09:31:55.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.701][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2021-12-11 09:31:55.702][self$set] Set key entries.sep to "|".
biodb.DEBUG[2021-12-11 09:31:55.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.705][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2021-12-11 09:31:55.705][self$set] Set key offline to FALSE.
biodb.DEBUG[2021-12-11 09:31:55.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.708][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2021-12-11 09:31:55.709][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2021-12-11 09:31:55.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.712][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2021-12-11 09:31:55.712][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2021-12-11 09:31:55.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.715][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2021-12-11 09:31:55.716][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2021-12-11 09:31:55.721][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2021-12-11 09:31:55.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.724][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2021-12-11 09:31:55.725][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2021-12-11 09:31:55.726][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2021-12-11 09:31:55.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.729][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2021-12-11 09:31:55.749][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:55.761][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2021-12-11 09:31:55.762][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:55.762][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-11 09:31:55.763][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:55.764][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-11 09:31:55.765][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:55.765][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-11 09:31:55.766][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2021-12-11 09:31:55.767][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-11 09:31:55.768][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:55.768][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2021-12-11 09:31:55.769][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-11 09:31:55.770][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:55.771][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:55.771][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2021-12-11 09:31:55.771][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2021-12-11 09:31:55.771][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2021-12-11 09:31:55.771][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2021-12-11 09:31:55.771][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2021-12-11 09:31:55.772][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-11 09:31:55.773][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-11 09:31:55.774][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-11 09:31:55.774][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-11 09:31:55.775][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-11 09:31:55.776][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-11 09:31:55.776][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-11 09:31:55.777][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:55.778][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-11 09:31:55.779][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-11 09:31:55.779][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:55.780][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:55.781][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2021-12-11 09:31:55.786][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:55.787][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2021-12-11 09:31:55.788][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:55.788][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-11 09:31:55.789][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:55.790][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-11 09:31:55.791][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:55.791][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-11 09:31:55.792][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2021-12-11 09:31:55.793][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-11 09:31:55.794][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:55.794][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2021-12-11 09:31:55.795][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-11 09:31:55.796][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:55.797][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:55.797][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2021-12-11 09:31:55.797][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2021-12-11 09:31:55.797][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2021-12-11 09:31:55.797][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2021-12-11 09:31:55.797][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2021-12-11 09:31:55.798][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-11 09:31:55.799][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-11 09:31:55.800][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-11 09:31:55.800][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-11 09:31:55.801][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-11 09:31:55.802][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-11 09:31:55.802][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-11 09:31:55.803][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:55.804][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-11 09:31:55.804][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-11 09:31:55.805][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:55.806][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:55.807][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2021-12-11 09:31:55.808][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:55.809][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2021-12-11 09:31:55.810][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:55.811][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-11 09:31:55.811][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:55.812][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-11 09:31:55.813][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:55.813][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-11 09:31:55.814][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2021-12-11 09:31:55.815][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-11 09:31:55.816][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:55.816][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2021-12-11 09:31:55.817][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-11 09:31:55.818][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:55.819][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:55.819][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:55.820][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-11 09:31:55.821][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-11 09:31:55.822][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-11 09:31:55.822][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-11 09:31:55.823][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-11 09:31:55.824][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-11 09:31:55.824][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-11 09:31:55.825][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:55.826][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-11 09:31:55.826][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-11 09:31:55.827][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:55.828][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:55.829][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2021-12-11 09:31:55.830][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:55.831][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2021-12-11 09:31:55.832][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:55.832][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-11 09:31:55.833][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:55.834][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-11 09:31:55.835][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:55.835][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-11 09:31:55.836][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2021-12-11 09:31:55.837][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-11 09:31:55.838][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:55.838][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2021-12-11 09:31:55.839][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-11 09:31:55.840][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:55.841][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:55.841][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:55.842][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-11 09:31:55.843][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-11 09:31:55.843][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-11 09:31:55.844][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-11 09:31:55.845][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-11 09:31:55.846][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-11 09:31:55.846][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-11 09:31:55.847][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:55.848][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-11 09:31:55.848][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-11 09:31:55.849][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:55.850][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:55.851][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2021-12-11 09:31:55.851][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:55.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:55.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:55.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:55.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:55.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:55.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.863][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:55.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:55.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:55.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:55.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.869][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:55.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:55.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:55.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:55.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:55.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:55.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.879][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:55.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:55.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:55.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:55.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:55.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:55.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.889][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:55.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:55.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:55.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:55.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.895][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:55.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:55.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.899][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:55.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:55.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:55.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:55.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:55.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:55.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:55.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:55.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:55.912][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2021-12-11 09:31:55.913][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2021-12-11 09:31:55.914][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2021-12-11 09:31:55.916][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2021-12-11 09:31:55.917][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2021-12-11 09:31:55.918][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2021-12-11 09:31:55.919][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2021-12-11 09:31:55.920][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2021-12-11 09:31:55.921][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2021-12-11 09:31:55.922][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2021-12-11 09:31:55.923][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2021-12-11 09:31:55.924][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2021-12-11 09:31:55.925][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2021-12-11 09:31:55.926][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2021-12-11 09:31:55.927][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2021-12-11 09:31:55.928][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2021-12-11 09:31:55.929][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2021-12-11 09:31:55.930][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2021-12-11 09:31:55.931][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2021-12-11 09:31:55.932][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:31:55.933][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2021-12-11 09:31:55.934][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2021-12-11 09:31:55.935][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2021-12-11 09:31:55.936][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2021-12-11 09:31:55.937][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2021-12-11 09:31:55.938][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2021-12-11 09:31:55.939][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2021-12-11 09:31:55.940][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2021-12-11 09:31:55.941][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2021-12-11 09:31:55.942][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2021-12-11 09:31:55.944][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2021-12-11 09:31:55.945][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2021-12-11 09:31:55.946][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2021-12-11 09:31:55.947][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2021-12-11 09:31:55.948][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2021-12-11 09:31:55.949][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2021-12-11 09:31:55.950][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2021-12-11 09:31:55.951][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2021-12-11 09:31:55.952][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2021-12-11 09:31:55.953][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2021-12-11 09:31:55.954][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2021-12-11 09:31:55.955][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2021-12-11 09:31:55.956][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2021-12-11 09:31:55.957][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2021-12-11 09:31:55.958][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2021-12-11 09:31:55.959][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2021-12-11 09:31:55.960][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2021-12-11 09:31:55.961][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2021-12-11 09:31:55.962][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2021-12-11 09:31:55.963][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2021-12-11 09:31:55.964][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2021-12-11 09:31:55.965][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2021-12-11 09:31:55.966][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2021-12-11 09:31:55.967][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2021-12-11 09:31:55.968][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2021-12-11 09:31:55.969][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2021-12-11 09:31:55.970][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2021-12-11 09:31:55.971][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2021-12-11 09:31:55.972][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2021-12-11 09:31:55.974][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2021-12-11 09:31:55.975][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2021-12-11 09:31:55.976][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2021-12-11 09:31:55.977][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2021-12-11 09:31:55.978][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2021-12-11 09:31:55.979][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2021-12-11 09:31:55.980][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2021-12-11 09:31:55.981][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2021-12-11 09:31:55.982][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2021-12-11 09:31:55.983][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2021-12-11 09:31:55.984][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2021-12-11 09:31:55.985][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2021-12-11 09:31:55.986][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2021-12-11 09:31:55.987][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2021-12-11 09:31:55.988][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2021-12-11 09:31:55.989][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2021-12-11 09:31:55.990][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2021-12-11 09:31:55.991][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2021-12-11 09:31:55.992][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2021-12-11 09:31:55.993][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2021-12-11 09:31:55.994][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2021-12-11 09:31:55.995][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2021-12-11 09:31:55.996][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2021-12-11 09:31:55.997][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2021-12-11 09:31:56.002][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2021-12-11 09:31:56.003][initialize] This is biodb version 1.3.1.
biodb.INFO [2021-12-11 09:31:56.004][biodb::testContext] 
biodb.INFO [2021-12-11 09:31:56.005][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-11 09:31:56.005][biodb::testContext] Test context - Long tests on extension generator.
biodb.INFO [2021-12-11 09:31:56.006][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-11 09:31:56.007][biodb::testContext] 
biodb.INFO [2021-12-11 09:31:56.008][biodb::testThat] 
biodb.INFO [2021-12-11 09:31:56.009][biodb::testThat] Running test function  test_runningMakeOnNewExtPkg  (" We can run make on a newly generated extension package. ").
biodb.INFO [2021-12-11 09:31:56.009][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-11 09:31:56.010][biodb::testThat] 
biodb.DEBUG[2021-12-11 09:31:57.354][function()] Package directory is "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/biodbFoo2LocalRcpp".
biodb.DEBUG[2021-12-11 09:31:57.355][function()] Make log file is "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/biodbFoo2LocalRcpp.make.doc.log".
biodb.DEBUG[2021-12-11 09:31:57.640][function()] Make log file is "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/biodbFoo2LocalRcpp.make.log".
biodb.DEBUG[2021-12-11 09:31:57.720][function()] Make log file is "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/biodbFoo2LocalRcpp.make.test.log".
biodb.INFO [2021-12-11 09:31:57.830][biodb::testContext] 
biodb.INFO [2021-12-11 09:31:57.831][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-11 09:31:57.831][biodb::testContext] Test context - CompCsvFile long generic tests
biodb.INFO [2021-12-11 09:31:57.832][biodb::testContext] ********************************************************************************
biodb.INFO [2021-12-11 09:31:57.833][biodb::testContext] 
biodb.INFO [2021-12-11 09:31:57.838][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.3.1.
biodb.DEBUG[2021-12-11 09:31:57.839][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/biodb/definitions.yml".
biodb.DEBUG[2021-12-11 09:31:57.842][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2021-12-11 09:31:57.843][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2021-12-11 09:31:57.844][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2021-12-11 09:31:57.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:57.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:57.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:57.847][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2021-12-11 09:31:57.848][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2021-12-11 09:31:57.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:57.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:57.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:57.850][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2021-12-11 09:31:57.851][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2021-12-11 09:31:57.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:57.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:57.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:57.854][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2021-12-11 09:31:57.855][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2021-12-11 09:31:57.856][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2021-12-11 09:31:57.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:57.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:57.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:57.863][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2021-12-11 09:31:57.864][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2021-12-11 09:31:57.865][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2021-12-11 09:31:57.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:57.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:57.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:57.868][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2021-12-11 09:31:57.869][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2021-12-11 09:31:57.869][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:57.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:57.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:57.872][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2021-12-11 09:31:57.872][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2021-12-11 09:31:57.873][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2021-12-11 09:31:57.874][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:57.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:57.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:57.876][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2021-12-11 09:31:57.877][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2021-12-11 09:31:57.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:57.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:57.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:57.880][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2021-12-11 09:31:57.880][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2021-12-11 09:31:57.881][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2021-12-11 09:31:57.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:57.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:57.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:57.884][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2021-12-11 09:31:57.885][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2021-12-11 09:31:57.886][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2021-12-11 09:31:57.886][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2021-12-11 09:31:57.887][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2021-12-11 09:31:57.888][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2021-12-11 09:31:57.889][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:57.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:57.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:57.891][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2021-12-11 09:31:57.892][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2021-12-11 09:31:57.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:57.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:57.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:57.894][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2021-12-11 09:31:57.895][self$set] Set key entries.sep to "|".
biodb.DEBUG[2021-12-11 09:31:57.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:57.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:57.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:57.898][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2021-12-11 09:31:57.899][self$set] Set key offline to FALSE.
biodb.DEBUG[2021-12-11 09:31:57.900][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:57.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:57.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:57.902][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2021-12-11 09:31:57.903][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2021-12-11 09:31:57.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:57.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:57.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:57.905][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2021-12-11 09:31:57.906][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2021-12-11 09:31:57.907][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:57.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:57.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:57.909][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2021-12-11 09:31:57.910][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2021-12-11 09:31:57.915][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2021-12-11 09:31:57.916][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:57.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:57.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:57.918][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2021-12-11 09:31:57.919][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2021-12-11 09:31:57.920][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2021-12-11 09:31:57.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:57.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:57.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:57.923][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2021-12-11 09:31:57.924][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:57.925][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2021-12-11 09:31:57.926][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:57.927][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-11 09:31:57.927][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:57.928][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-11 09:31:57.929][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:57.930][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-11 09:31:57.931][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2021-12-11 09:31:57.931][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-11 09:31:57.932][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:57.933][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2021-12-11 09:31:57.934][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-11 09:31:57.934][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:57.935][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:57.936][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2021-12-11 09:31:57.936][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2021-12-11 09:31:57.936][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2021-12-11 09:31:57.936][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2021-12-11 09:31:57.936][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2021-12-11 09:31:57.937][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-11 09:31:57.938][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-11 09:31:57.938][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-11 09:31:57.939][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-11 09:31:57.940][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-11 09:31:57.940][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-11 09:31:57.941][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-11 09:31:57.942][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:57.943][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-11 09:31:57.943][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-11 09:31:57.944][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:57.945][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:57.946][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2021-12-11 09:31:57.947][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:57.948][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2021-12-11 09:31:57.949][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:57.950][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-11 09:31:57.951][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:57.951][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-11 09:31:57.952][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:57.953][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-11 09:31:57.954][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2021-12-11 09:31:57.954][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-11 09:31:57.955][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:57.956][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2021-12-11 09:31:57.957][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-11 09:31:57.958][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:57.958][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:57.959][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2021-12-11 09:31:57.959][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2021-12-11 09:31:57.959][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2021-12-11 09:31:57.959][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2021-12-11 09:31:57.959][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2021-12-11 09:31:57.960][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-11 09:31:57.961][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-11 09:31:57.962][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-11 09:31:57.962][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-11 09:31:57.963][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-11 09:31:57.964][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-11 09:31:57.964][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-11 09:31:57.965][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:57.966][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-11 09:31:57.967][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-11 09:31:57.967][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:57.968][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:57.969][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2021-12-11 09:31:57.971][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:57.971][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2021-12-11 09:31:57.972][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:57.973][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-11 09:31:57.974][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:57.975][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-11 09:31:57.975][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:57.976][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-11 09:31:57.977][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2021-12-11 09:31:57.978][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-11 09:31:57.979][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:57.979][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2021-12-11 09:31:57.980][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-11 09:31:57.981][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:57.982][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:57.983][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:57.983][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-11 09:31:57.984][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-11 09:31:57.985][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-11 09:31:57.986][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-11 09:31:57.987][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-11 09:31:57.987][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-11 09:31:57.988][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-11 09:31:57.993][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:57.994][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-11 09:31:57.994][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-11 09:31:57.995][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:57.996][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:57.997][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2021-12-11 09:31:57.998][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:57.999][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2021-12-11 09:31:58.000][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:58.001][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2021-12-11 09:31:58.002][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:58.002][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2021-12-11 09:31:58.003][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:58.004][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2021-12-11 09:31:58.005][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2021-12-11 09:31:58.005][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2021-12-11 09:31:58.006][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:58.007][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2021-12-11 09:31:58.008][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2021-12-11 09:31:58.009][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:58.009][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2021-12-11 09:31:58.010][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:58.011][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2021-12-11 09:31:58.012][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-11 09:31:58.012][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-11 09:31:58.013][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2021-12-11 09:31:58.014][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2021-12-11 09:31:58.015][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2021-12-11 09:31:58.015][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2021-12-11 09:31:58.016][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:58.017][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2021-12-11 09:31:58.018][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2021-12-11 09:31:58.018][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2021-12-11 09:31:58.019][self$setPropertyValue] 
biodb.DEBUG[2021-12-11 09:31:58.020][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2021-12-11 09:31:58.021][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:58.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:58.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:58.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:58.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:58.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:58.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:58.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:58.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:58.036][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:58.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:58.040][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:58.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:58.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:58.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:58.047][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:58.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:58.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:58.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:58.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:58.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:58.057][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:58.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:58.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:58.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:58.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:58.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:58.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:58.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:58.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:58.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:58.074][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:58.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:58.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:58.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:58.081][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2021-12-11 09:31:58.082][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2021-12-11 09:31:58.083][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2021-12-11 09:31:58.084][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2021-12-11 09:31:58.085][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2021-12-11 09:31:58.087][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2021-12-11 09:31:58.088][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2021-12-11 09:31:58.089][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2021-12-11 09:31:58.090][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2021-12-11 09:31:58.091][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2021-12-11 09:31:58.092][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2021-12-11 09:31:58.093][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2021-12-11 09:31:58.094][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2021-12-11 09:31:58.095][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2021-12-11 09:31:58.096][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2021-12-11 09:31:58.097][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2021-12-11 09:31:58.098][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2021-12-11 09:31:58.099][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2021-12-11 09:31:58.100][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2021-12-11 09:31:58.102][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:31:58.103][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2021-12-11 09:31:58.104][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2021-12-11 09:31:58.105][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2021-12-11 09:31:58.106][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2021-12-11 09:31:58.107][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2021-12-11 09:31:58.108][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2021-12-11 09:31:58.109][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2021-12-11 09:31:58.110][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2021-12-11 09:31:58.115][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2021-12-11 09:31:58.116][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2021-12-11 09:31:58.118][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2021-12-11 09:31:58.119][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2021-12-11 09:31:58.120][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2021-12-11 09:31:58.121][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2021-12-11 09:31:58.122][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2021-12-11 09:31:58.123][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2021-12-11 09:31:58.124][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2021-12-11 09:31:58.125][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2021-12-11 09:31:58.126][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2021-12-11 09:31:58.127][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2021-12-11 09:31:58.128][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2021-12-11 09:31:58.130][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2021-12-11 09:31:58.131][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2021-12-11 09:31:58.132][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2021-12-11 09:31:58.133][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2021-12-11 09:31:58.134][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2021-12-11 09:31:58.135][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2021-12-11 09:31:58.136][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2021-12-11 09:31:58.137][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2021-12-11 09:31:58.138][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2021-12-11 09:31:58.139][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2021-12-11 09:31:58.140][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2021-12-11 09:31:58.141][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2021-12-11 09:31:58.143][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2021-12-11 09:31:58.144][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2021-12-11 09:31:58.145][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2021-12-11 09:31:58.146][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2021-12-11 09:31:58.147][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2021-12-11 09:31:58.148][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2021-12-11 09:31:58.149][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2021-12-11 09:31:58.150][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2021-12-11 09:31:58.151][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2021-12-11 09:31:58.152][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2021-12-11 09:31:58.153][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2021-12-11 09:31:58.154][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2021-12-11 09:31:58.155][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2021-12-11 09:31:58.156][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2021-12-11 09:31:58.158][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2021-12-11 09:31:58.159][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2021-12-11 09:31:58.160][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2021-12-11 09:31:58.161][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2021-12-11 09:31:58.162][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2021-12-11 09:31:58.163][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2021-12-11 09:31:58.164][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2021-12-11 09:31:58.165][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2021-12-11 09:31:58.166][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2021-12-11 09:31:58.167][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2021-12-11 09:31:58.168][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2021-12-11 09:31:58.169][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2021-12-11 09:31:58.170][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2021-12-11 09:31:58.171][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2021-12-11 09:31:58.173][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2021-12-11 09:31:58.174][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2021-12-11 09:31:58.175][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2021-12-11 09:31:58.176][initialize] This is biodb version 1.3.1.
biodb.DEBUG[2021-12-11 09:31:58.179][super$initialize] Initialize connector comp.csv.file.
biodb.DEBUG[2021-12-11 09:31:58.179][biodb$getFactory()$createConn] Creating new connector comp.csv.file for database class comp.csv.file , with base URL "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/chebi_extract.tsv".
biodb.INFO [2021-12-11 09:31:58.191][biodb::testThat] 
biodb.INFO [2021-12-11 09:31:58.192][biodb::testThat] Running test function  test_cache_for_local_db  (" We can use the cache system for a local database. ").
biodb.INFO [2021-12-11 09:31:58.193][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-11 09:31:58.194][biodb::testThat] 
biodb.DEBUG[2021-12-11 09:31:58.195][bdb$getConfig()$set] Set key use.cache.for.local.db to TRUE.
biodb.DEBUG[2021-12-11 09:31:58.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:58.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:58.213][private$loadEntries] Creating entries from ids [2]: "1018, 15939".
biodb.DEBUG[2021-12-11 09:31:58.215][conn$getEntryContent] Get Compound CSV File entry content(s) for 2 id(s)...
biodb.TRACE[2021-12-11 09:31:58.219][cch$loadFileContent] Trying to load 2 files from cache: [2]: "1018, 15939".
biodb.INFO [2021-12-11 09:31:58.221][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/comp.csv.file-5482baa87eabaaa0d575b506828db457" for "comp.csv.file-5482baa87eabaaa0d575b506828db457".
biodb.TRACE[2021-12-11 09:31:58.222][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2021-12-11 09:31:58.223][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2021-12-11 09:31:58.225][conn$getEntryContent] 0 Compound CSV File entry content(s) loaded from cache.
biodb.DEBUG[2021-12-11 09:31:58.226][conn$getEntryContent] 2 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2021-12-11 09:31:58.227][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-11 09:31:58.228][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-11 09:31:58.229][private$doGetEntryContentFromDb] Entry id: 1018, 15939
biodb.INFO [2021-12-11 09:31:58.231][private$initDb] Loading file database "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2021-12-11 09:31:58.234][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2021-12-11 09:31:58.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:31:58.252][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-11 09:31:58.275][self$setField] Set field formula to column(s) formula.
biodb.TRACE[2021-12-11 09:31:58.276][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:31:58.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:31:58.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:31:58.279][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-11 09:31:58.279][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-11 09:31:58.280][self$setField] Set field monoisotopic.mass to column(s) monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:58.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:58.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:58.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:31:58.284][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-11 09:31:58.284][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-11 09:31:58.284][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-11 09:31:58.285][self$setField] Set field molecular.mass to column(s) molecular.mass.
biodb.TRACE[2021-12-11 09:31:58.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:58.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:58.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:31:58.289][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-11 09:31:58.289][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-11 09:31:58.289][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-11 09:31:58.289][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-11 09:31:58.290][self$setField] Set field kegg.compound.id to column(s) kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:58.291][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:58.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:58.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:31:58.294][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-11 09:31:58.294][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-11 09:31:58.294][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-11 09:31:58.294][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-11 09:31:58.294][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-11 09:31:58.295][self$setField] Set field name to column(s) name.
biodb.TRACE[2021-12-11 09:31:58.296][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:58.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:58.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:31:58.299][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-11 09:31:58.299][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-11 09:31:58.299][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-11 09:31:58.299][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-11 09:31:58.299][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-11 09:31:58.299][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-11 09:31:58.300][self$setField] Set field smiles to column(s) smiles.
biodb.TRACE[2021-12-11 09:31:58.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:31:58.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:31:58.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:31:58.303][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-11 09:31:58.303][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-11 09:31:58.303][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-11 09:31:58.303][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-11 09:31:58.303][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-11 09:31:58.303][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-11 09:31:58.303][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-11 09:31:58.304][self$setField] Set field description to column(s) description.
biodb.TRACE[2021-12-11 09:31:58.305][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:31:58.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:31:58.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:31:58.308][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-11 09:31:58.308][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-11 09:31:58.308][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-11 09:31:58.308][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-11 09:31:58.308][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-11 09:31:58.308][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-11 09:31:58.308][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-11 09:31:58.308][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-11 09:31:58.337][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1018	C2H8AsNO3	168.97201	169.012	C07279	2-Aminoethylarsonate	NCC[As](O)(O)=O	
biodb.TRACE[2021-12-11 09:31:58.362][private$doSaveContentToFile] Saving to cache [2]: "/home/biocbuild/.cache/R/biodb/comp.csv.file-5482baa87eabaaa0d575b506828db457/1018.tsv, /home/biocbuild/.cache/R/biodb/comp.csv.file-5482baa87eabaaa0d575b506828db457/15939.tsv"
biodb.DEBUG[2021-12-11 09:31:58.366][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2021-12-11 09:31:58.376][self$createEntryFromContent] Creating Compound CSV File entries from 2 content(s).
biodb.DEBUG[2021-12-11 09:31:58.377][self$createEntryFromContent] Parsing 2 Compound CSV File entries.
biodb.DEBUG[2021-12-11 09:31:58.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:31:58.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2021-12-11 09:31:58.389][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-11 09:31:58.389][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-11 09:31:58.389][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-11 09:31:58.389][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-11 09:31:58.389][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-11 09:31:58.389][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-11 09:31:58.389][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-11 09:31:58.389][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-11 09:31:58.390][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-11 09:31:58.390][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-11 09:31:58.390][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-11 09:31:58.390][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-11 09:31:58.390][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-11 09:31:58.390][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-11 09:31:58.390][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-11 09:31:58.390][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-11 09:31:58.391][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-11 09:31:58.391][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-11 09:31:58.391][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-11 09:31:58.391][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-11 09:31:58.391][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-11 09:31:58.391][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-11 09:31:58.391][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-11 09:31:58.391][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-11 09:31:58.391][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-11 09:31:58.391][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-11 09:31:58.391][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-11 09:31:58.391][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-11 09:31:58.391][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-11 09:31:58.391][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-11 09:31:58.391][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-11 09:31:58.391][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-11 09:31:58.392][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-11 09:31:58.392][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-11 09:31:58.392][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-11 09:31:58.392][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-11 09:31:58.392][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-11 09:31:58.392][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-11 09:31:58.392][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-11 09:31:58.392][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-11 09:31:58.393][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-11 09:31:58.393][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-11 09:31:58.393][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-11 09:31:58.393][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-11 09:31:58.393][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-11 09:31:58.393][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-11 09:31:58.393][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-11 09:31:58.393][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-11 09:31:58.394][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-11 09:31:58.394][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-11 09:31:58.394][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-11 09:31:58.394][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-11 09:31:58.394][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-11 09:31:58.394][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-11 09:31:58.394][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-11 09:31:58.394][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.DEBUG[2021-12-11 09:31:58.395][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-11 09:31:58.395][self$setPropertyValue] Setting property "parsing.expr" to "formula".
biodb.DEBUG[2021-12-11 09:31:58.395][self$setPropertyValue] Setting property "parsing.expr" to "monoisotopic.mass".
biodb.DEBUG[2021-12-11 09:31:58.395][self$setPropertyValue] Setting property "parsing.expr" to "molecular.mass".
biodb.DEBUG[2021-12-11 09:31:58.395][self$setPropertyValue] Setting property "parsing.expr" to "kegg.compound.id".
biodb.DEBUG[2021-12-11 09:31:58.395][self$setPropertyValue] Setting property "parsing.expr" to "name".
biodb.DEBUG[2021-12-11 09:31:58.395][self$setPropertyValue] Setting property "parsing.expr" to "smiles".
biodb.DEBUG[2021-12-11 09:31:58.395][self$setPropertyValue] Setting property "parsing.expr" to "description".
biodb.TRACE[2021-12-11 09:31:58.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.405][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:31:58.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:31:58.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.426][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:31:58.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:31:58.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:58.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:58.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:58.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:58.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:58.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:58.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:58.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:58.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.451][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:58.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:58.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.455][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:58.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:58.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.461][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:58.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:58.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:58.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:58.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.475][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:31:58.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:31:58.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:31:58.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:31:58.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.484][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:31:58.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:31:58.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.487][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:31:58.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:31:58.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:58.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:58.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:58.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:58.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:58.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:58.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:31:58.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:31:58.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:31:58.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.549][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:31:58.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:31:58.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.553][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:31:58.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:31:58.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:58.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:58.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:58.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:58.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:58.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:58.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:58.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:58.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.578][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:58.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:58.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.585][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:58.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:58.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:58.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:58.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:58.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:58.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.601][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:31:58.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:31:58.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.604][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:31:58.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:31:58.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.611][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:31:58.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:31:58.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.614][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:31:58.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:31:58.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:58.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:58.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:58.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:58.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:58.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:58.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:31:58.693][self$createEntryFromContent] Accession numbers: 1018, 15939.
biodb.TRACE[2021-12-11 09:31:58.711][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-11 09:31:58.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-11 09:31:58.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.714][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-11 09:31:58.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-11 09:31:58.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.717][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-11 09:31:58.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-11 09:31:58.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.720][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-11 09:31:58.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-11 09:31:58.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.732][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-11 09:31:58.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-11 09:31:58.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.735][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-11 09:31:58.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-11 09:31:58.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.738][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-11 09:31:58.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-11 09:31:58.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.741][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-11 09:31:58.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-11 09:31:58.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.774][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-11 09:31:58.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-11 09:31:58.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.777][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-11 09:31:58.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-11 09:31:58.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.780][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-11 09:31:58.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-11 09:31:58.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.783][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-11 09:31:58.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-11 09:31:58.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.788][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-11 09:31:58.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-11 09:31:58.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.791][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-11 09:31:58.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-11 09:31:58.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.798][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-11 09:31:58.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-11 09:31:58.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.801][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-11 09:31:58.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-11 09:31:58.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:31:58.809][bdb$getConfig()$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2021-12-11 09:31:58.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2021-12-11 09:31:58.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2021-12-11 09:31:58.814][biodb::testThat] 
biodb.INFO [2021-12-11 09:31:58.814][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2021-12-11 09:31:58.815][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-11 09:31:58.816][biodb::testThat] 
biodb.TRACE[2021-12-11 09:31:58.818][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/biodb/testref/entry-comp.csv.file-1018-content.tsv".
biodb.DEBUG[2021-12-11 09:31:58.838][biodb$getFactory()$createEntryFromCo ...] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2021-12-11 09:31:58.839][biodb$getFactory()$createEntryFromCo ...] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2021-12-11 09:31:58.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:31:58.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:58.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:58.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:58.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:31:58.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.855][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:31:58.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:31:58.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.859][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:31:58.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:31:58.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:58.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:58.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:58.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:58.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:58.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:58.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:58.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:58.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.883][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:58.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:58.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.886][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:58.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:58.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.892][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:58.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:58.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:58.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:58.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.901][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:31:58.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:31:58.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:31:58.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:31:58.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.914][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:31:58.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:31:58.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.917][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:31:58.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:31:58.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:58.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:58.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:58.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:58.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:58.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:58.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:31:58.957][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 1018.
biodb.TRACE[2021-12-11 09:31:58.968][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-11 09:31:58.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-11 09:31:58.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.971][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-11 09:31:58.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-11 09:31:58.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.974][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-11 09:31:58.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-11 09:31:58.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.977][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-11 09:31:58.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-11 09:31:58.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:58.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:58.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:58.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:58.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.051][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.051][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.052][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.053][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.066][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.069][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.070][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.071][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.072][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.072][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.079][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:31:59.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:31:59.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.082][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:31:59.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:31:59.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.085][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:31:59.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:31:59.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.088][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:31:59.089][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:31:59.090][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.090][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.091][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:31:59.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:31:59.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.098][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:31:59.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:31:59.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.101][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:31:59.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:31:59.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.104][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:31:59.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:31:59.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.107][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:31:59.108][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:31:59.108][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.109][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:31:59.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:31:59.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:31:59.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:31:59.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:31:59.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:31:59.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:31:59.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:31:59.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.125][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:31:59.126][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:31:59.127][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.128][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:31:59.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:31:59.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.144][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.145][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.149][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.150][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.167][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.167][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.168][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.169][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.176][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.179][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.182][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.185][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.186][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.187][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.187][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.188][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.194][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.195][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.196][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.197][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.199][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:31:59.200][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:31:59.200][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.201][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.203][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:31:59.204][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:31:59.205][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.205][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.207][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.208][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.209][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.210][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.212][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.213][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.213][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.214][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.216][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.217][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.218][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.218][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.221][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.221][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.222][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.223][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.225][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:31:59.226][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:31:59.226][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.227][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.238][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/biodb/testref/entry-comp.csv.file-15939-content.tsv".
biodb.DEBUG[2021-12-11 09:31:59.242][biodb$getFactory()$createEntryFromCo ...] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2021-12-11 09:31:59.243][biodb$getFactory()$createEntryFromCo ...] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2021-12-11 09:31:59.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:31:59.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:31:59.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:31:59.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:31:59.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:31:59.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.263][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:31:59.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:31:59.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.266][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:31:59.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:31:59.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.289][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.292][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:31:59.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:31:59.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:31:59.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:31:59.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.315][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:31:59.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:31:59.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.318][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:31:59.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:31:59.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:31:59.357][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15939.
biodb.TRACE[2021-12-11 09:31:59.361][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-11 09:31:59.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-11 09:31:59.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.368][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-11 09:31:59.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-11 09:31:59.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.371][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-11 09:31:59.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-11 09:31:59.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.374][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-11 09:31:59.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-11 09:31:59.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:31:59.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.451][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.452][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.453][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.454][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.461][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.467][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.470][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.470][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.471][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.472][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.473][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.479][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:31:59.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:31:59.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.482][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:31:59.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:31:59.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.485][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:31:59.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:31:59.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.488][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:31:59.489][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:31:59.489][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.490][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.494][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:31:59.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:31:59.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:31:59.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:31:59.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.504][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:31:59.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:31:59.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.507][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:31:59.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:31:59.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.510][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:31:59.511][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:31:59.511][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.512][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:31:59.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:31:59.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.519][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:31:59.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:31:59.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.522][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:31:59.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:31:59.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.525][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:31:59.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:31:59.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.528][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:31:59.529][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:31:59.529][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.530][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.531][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:31:59.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:31:59.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.546][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.547][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.548][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.548][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.564][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.565][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.566][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.567][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.574][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.577][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.580][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.583][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.583][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.584][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.585][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.585][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.592][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:31:59.593][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:31:59.593][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.594][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.596][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:31:59.597][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:31:59.598][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.598][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.601][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:31:59.601][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:31:59.602][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.613][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.616][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.617][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:31:59.617][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.618][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.621][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.621][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.622][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.623][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.625][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.626][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.626][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.627][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.629][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.630][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.631][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.632][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.634][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:31:59.635][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:31:59.635][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.636][ef$get] fields variable is a list.
biodb.INFO [2021-12-11 09:31:59.639][biodb::testThat] 
biodb.INFO [2021-12-11 09:31:59.639][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2021-12-11 09:31:59.640][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-11 09:31:59.641][biodb::testThat] 
biodb.TRACE[2021-12-11 09:31:59.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2021-12-11 09:31:59.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2021-12-11 09:31:59.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2021-12-11 09:31:59.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2021-12-11 09:31:59.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2021-12-11 09:31:59.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2021-12-11 09:31:59.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2021-12-11 09:31:59.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2021-12-11 09:31:59.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2021-12-11 09:31:59.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2021-12-11 09:31:59.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2021-12-11 09:31:59.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2021-12-11 09:31:59.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2021-12-11 09:31:59.674][biodb::testThat] 
biodb.INFO [2021-12-11 09:31:59.675][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2021-12-11 09:31:59.675][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-11 09:31:59.676][biodb::testThat] 
biodb.TRACE[2021-12-11 09:31:59.678][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.679][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.679][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.680][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:31:59.681][function(conn, opt)] Testing searchForEntries() with entry "1018" and field "name".
biodb.TRACE[2021-12-11 09:31:59.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:31:59.696][function(conn, opt)] With value "2-Aminoethylarsonate".
biodb.DEBUG[2021-12-11 09:31:59.701][private$selectBySubstring] 13 values to filter on field name.
biodb.TRACE[2021-12-11 09:31:59.702][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.703][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.703][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.704][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:31:59.705][function(conn, opt)] With found IDs [1]: "1018".
biodb.TRACE[2021-12-11 09:31:59.710][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.711][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:31:59.712][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.713][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.713][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.714][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:31:59.715][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.716][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.716][ef$get] Asked field names are: average.mass.
biodb.TRACE[2021-12-11 09:31:59.717][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2021-12-11 09:31:59.718][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.718][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.719][ef$get] Asked field names are: nominal.mass.
biodb.TRACE[2021-12-11 09:31:59.720][ef$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2021-12-11 09:31:59.724][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.725][ef$get] fields variable is a list.
biodb.INFO [2021-12-11 09:31:59.726][biodb::testThat] 
biodb.INFO [2021-12-11 09:31:59.727][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2021-12-11 09:31:59.728][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-11 09:31:59.729][biodb::testThat] 
biodb.TRACE[2021-12-11 09:31:59.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.742][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:31:59.777][private$selectBySubstring] 13 values to filter on field name.
biodb.TRACE[2021-12-11 09:31:59.779][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:31:59.779][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:31:59.780][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.781][ef$get] fields variable is a list.
biodb.INFO [2021-12-11 09:31:59.787][biodb::testThat] 
biodb.INFO [2021-12-11 09:31:59.788][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2021-12-11 09:31:59.789][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-11 09:31:59.790][biodb::testThat] 
biodb.TRACE[2021-12-11 09:31:59.812][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-11 09:31:59.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-11 09:31:59.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.815][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-11 09:31:59.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-11 09:31:59.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.818][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-11 09:31:59.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-11 09:31:59.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.821][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-11 09:31:59.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-11 09:31:59.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.832][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-11 09:31:59.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-11 09:31:59.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.835][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2021-12-11 09:31:59.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2021-12-11 09:31:59.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.838][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2021-12-11 09:31:59.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2021-12-11 09:31:59.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:31:59.841][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2021-12-11 09:31:59.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2021-12-11 09:31:59.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:31:59.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2021-12-11 09:32:00.137][biodb::testThat] 
biodb.INFO [2021-12-11 09:32:00.139][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2021-12-11 09:32:00.140][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-11 09:32:00.141][biodb::testThat] 
biodb.TRACE[2021-12-11 09:32:00.150][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:00.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:00.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.153][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:00.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:00.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.156][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:00.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:00.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:00.176][private$selectBySubstring] 13 values to filter on field name.
biodb.TRACE[2021-12-11 09:32:00.177][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:00.178][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:00.178][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.179][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:00.185][private$selectBySubstring] 13 values to filter on field name.
biodb.TRACE[2021-12-11 09:32:00.186][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:00.187][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:00.187][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.188][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.195][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2021-12-11 09:32:00.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2021-12-11 09:32:00.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.220][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.221][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.221][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.222][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:00.224][private$selectByRange] Filtering on field "molecular.mass", with range: [169.002, 169.022].
biodb.DEBUG[2021-12-11 09:32:00.225][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:00.242][private$selectBySubstring] 13 values to filter on field name.
biodb.TRACE[2021-12-11 09:32:00.243][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:00.244][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:00.245][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.246][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.246][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.247][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.248][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.249][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:00.265][private$selectByRange] Filtering on field "molecular.mass", with range: [169.002, 169.022].
biodb.DEBUG[2021-12-11 09:32:00.266][private$selectByRange] 1 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:00.279][private$selectBySubstring] 13 values to filter on field name.
biodb.TRACE[2021-12-11 09:32:00.280][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:00.281][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:00.281][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.282][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.283][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.284][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.284][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.285][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:00.287][private$selectByRange] Filtering on field "molecular.mass", with range: [169.002, 169.042].
biodb.DEBUG[2021-12-11 09:32:00.288][private$selectByRange] 1 values to filter on field molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.317][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.317][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.318][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:00.319][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [168.972, 168.97202].
biodb.DEBUG[2021-12-11 09:32:00.321][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:00.334][private$selectBySubstring] 13 values to filter on field name.
biodb.TRACE[2021-12-11 09:32:00.335][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:00.336][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:00.336][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.337][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.338][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.339][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.339][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.340][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:00.341][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [168.972, 168.97202].
biodb.DEBUG[2021-12-11 09:32:00.343][private$selectByRange] 1 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:00.360][private$selectBySubstring] 13 values to filter on field name.
biodb.TRACE[2021-12-11 09:32:00.361][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:00.361][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:00.362][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.363][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.364][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.364][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.365][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.366][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:00.367][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [168.972, 168.97204].
biodb.DEBUG[2021-12-11 09:32:00.369][private$selectByRange] 1 values to filter on field monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.376][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:00.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:00.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2021-12-11 09:32:00.382][biodb::testThat] 
biodb.INFO [2021-12-11 09:32:00.383][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2021-12-11 09:32:00.383][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-11 09:32:00.384][biodb::testThat] 
biodb.TRACE[2021-12-11 09:32:00.386][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2021-12-11 09:32:00.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2021-12-11 09:32:00.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.389][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2021-12-11 09:32:00.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2021-12-11 09:32:00.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:00.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:00.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:00.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:00.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:00.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:00.442][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.443][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.444][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.444][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:00.446][private$selectByRange] Filtering on field "molecular.mass", with range: [169.002, 169.022].
biodb.DEBUG[2021-12-11 09:32:00.447][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:00.449][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:00.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:00.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:00.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:00.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:00.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:00.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.460][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:00.464][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:00.465][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:00.466][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:00.466][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:00.467][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.468][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.469][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.470][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.470][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.471][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.472][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.473][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.473][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:00.474][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:00.475][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.476][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.476][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.477][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.478][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:00.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.494][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2021-12-11 09:32:00.495][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:00.495][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:00.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:00.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:00.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:00.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:00.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:00.521][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.522][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.523][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.523][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:00.525][private$selectByRange] Filtering on field "molecular.mass", with range: [822.9221, 822.9421].
biodb.DEBUG[2021-12-11 09:32:00.526][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:00.545][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:00.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:00.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:00.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:00.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:00.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:00.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.576][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:00.577][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:00.578][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:00.578][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:00.579][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:00.580][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.581][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.581][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.582][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.583][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.584][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.584][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.585][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.586][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:00.587][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:00.587][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.588][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.589][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.590][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.590][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:00.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.600][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [15939].
biodb.DEBUG[2021-12-11 09:32:00.601][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:00.602][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2021-12-11 09:32:00.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:00.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:00.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:00.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:00.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:00.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:00.698][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.699][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.699][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.700][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:00.701][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [168.96201, 168.98201].
biodb.DEBUG[2021-12-11 09:32:00.703][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:00.705][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:00.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:00.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:00.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:00.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:00.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:00.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.739][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:00.740][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:00.741][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:00.742][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:00.742][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:00.743][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.744][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.745][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.745][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.746][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.747][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.748][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.748][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.749][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:00.761][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:00.762][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.763][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.763][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.764][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.765][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:00.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.775][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2021-12-11 09:32:00.776][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:00.776][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:00.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:00.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:00.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:00.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:00.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:00.801][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.802][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:00.803][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.803][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:00.805][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [822.3938, 822.4138].
biodb.DEBUG[2021-12-11 09:32:00.806][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:00.808][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:00.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:00.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:00.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:00.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:00.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:00.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.819][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:00.820][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:00.820][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:00.821][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:00.822][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:00.823][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.823][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.824][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.825][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.826][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.826][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.827][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.828][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.829][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:00.829][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:00.830][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.831][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.832][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.832][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.833][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:00.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.843][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [15939].
biodb.DEBUG[2021-12-11 09:32:00.844][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:00.845][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2021-12-11 09:32:00.849][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:00.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:00.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.852][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:00.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:00.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2021-12-11 09:32:00.856][biodb::testThat] 
biodb.INFO [2021-12-11 09:32:00.856][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2021-12-11 09:32:00.857][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-11 09:32:00.858][biodb::testThat] 
biodb.TRACE[2021-12-11 09:32:00.860][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2021-12-11 09:32:00.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2021-12-11 09:32:00.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.863][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2021-12-11 09:32:00.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2021-12-11 09:32:00.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:00.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:00.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:00.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:00.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:00.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:00.920][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.921][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.922][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.923][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:00.924][private$selectByRange] Filtering on field "molecular.mass", with range: [169.00946482, 169.01453518].
biodb.DEBUG[2021-12-11 09:32:00.926][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:00.928][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:00.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:00.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:00.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:00.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:00.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:00.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.938][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:00.939][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:00.940][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:00.940][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:00.941][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:00.942][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.943][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.943][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.944][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.945][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.946][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.946][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.947][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.948][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:00.949][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:00.950][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.950][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.951][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.952][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.952][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:00.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:00.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:00.962][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2021-12-11 09:32:00.963][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:00.964][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:00.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:00.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:00.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:00.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:00.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:00.993][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.994][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:00.995][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:00.995][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:00.997][private$selectByRange] Filtering on field "molecular.mass", with range: [822.9197560185, 822.9444439815].
biodb.DEBUG[2021-12-11 09:32:00.998][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:01.000][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:01.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.011][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.011][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:01.012][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:01.013][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:01.014][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.014][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.015][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.016][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.017][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.017][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.018][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.019][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.020][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.020][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.021][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.022][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.023][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.023][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.024][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.025][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:01.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.035][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [15939].
biodb.DEBUG[2021-12-11 09:32:01.036][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:01.036][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2021-12-11 09:32:01.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:01.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.094][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.096][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.096][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.097][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:01.099][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [168.96947541985, 168.97454458015].
biodb.DEBUG[2021-12-11 09:32:01.100][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:01.102][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:01.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.112][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.113][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:01.114][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:01.115][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:01.115][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.116][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.117][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.118][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.118][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.119][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.120][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.121][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.121][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.122][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.123][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.124][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.124][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.125][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.126][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.126][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:01.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.137][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2021-12-11 09:32:01.137][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:01.138][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:01.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.163][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.164][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.165][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.166][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:01.167][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [822.391463943, 822.416136057].
biodb.DEBUG[2021-12-11 09:32:01.169][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:01.170][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:01.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.181][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.182][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:01.183][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:01.183][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:01.184][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.185][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.186][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.186][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.187][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.188][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.189][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.189][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.190][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.191][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.192][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.192][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.193][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.194][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.194][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.195][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:01.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.210][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [15939].
biodb.DEBUG[2021-12-11 09:32:01.210][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:01.211][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2021-12-11 09:32:01.215][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:01.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:01.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.218][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:01.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:01.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2021-12-11 09:32:01.222][biodb::testThat] 
biodb.INFO [2021-12-11 09:32:01.223][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2021-12-11 09:32:01.223][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-11 09:32:01.224][biodb::testThat] 
biodb.TRACE[2021-12-11 09:32:01.226][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2021-12-11 09:32:01.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2021-12-11 09:32:01.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.229][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2021-12-11 09:32:01.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2021-12-11 09:32:01.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:01.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.282][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.283][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.284][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.285][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:01.286][private$selectByRange] Filtering on field "molecular.mass", with range: [169.002, 169.022].
biodb.DEBUG[2021-12-11 09:32:01.288][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:01.290][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:01.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.300][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.301][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:01.302][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:01.302][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:01.303][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.304][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.305][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.305][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.306][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.307][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.308][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.312][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.313][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.314][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.315][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.316][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.316][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.317][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.318][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.319][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:01.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.329][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2021-12-11 09:32:01.329][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:01.330][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:01.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.355][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.356][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.357][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.357][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:01.359][private$selectByRange] Filtering on field "molecular.mass", with range: [822.9221, 822.9421].
biodb.DEBUG[2021-12-11 09:32:01.360][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:01.362][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:01.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.373][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.373][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:01.374][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:01.375][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:01.375][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.376][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.377][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.378][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.378][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.379][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.380][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.381][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.381][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.382][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.383][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.383][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.384][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.385][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.386][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.386][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:01.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.396][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [15939].
biodb.DEBUG[2021-12-11 09:32:01.397][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:01.398][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2021-12-11 09:32:01.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:01.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.461][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.462][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.463][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.463][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:01.465][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [168.96201, 168.98201].
biodb.DEBUG[2021-12-11 09:32:01.466][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:01.468][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:01.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.479][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.479][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:01.480][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:01.481][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:01.481][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.482][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.483][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.484][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.484][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.485][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.486][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.487][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.487][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.488][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.489][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.490][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.490][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.491][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.492][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.493][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:01.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.503][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2021-12-11 09:32:01.503][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:01.504][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:01.505][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.533][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.534][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:01.535][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.536][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:01.537][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [822.3938, 822.4138].
biodb.DEBUG[2021-12-11 09:32:01.539][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:01.540][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:01.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.552][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.552][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:01.553][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:01.554][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:01.554][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.555][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.556][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.557][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.557][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.558][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.559][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.560][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.560][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.561][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.562][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.563][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.564][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.564][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.565][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.566][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:01.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.576][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [15939].
biodb.DEBUG[2021-12-11 09:32:01.577][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:01.577][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2021-12-11 09:32:01.586][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:01.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:01.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.589][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:01.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:01.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2021-12-11 09:32:01.593][biodb::testThat] 
biodb.INFO [2021-12-11 09:32:01.593][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2021-12-11 09:32:01.594][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-11 09:32:01.595][biodb::testThat] 
biodb.TRACE[2021-12-11 09:32:01.597][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2021-12-11 09:32:01.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2021-12-11 09:32:01.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.600][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2021-12-11 09:32:01.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2021-12-11 09:32:01.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:01.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.657][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.658][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.659][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.660][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:01.661][private$selectByRange] Filtering on field "molecular.mass", with range: [168.802, 169.022].
biodb.DEBUG[2021-12-11 09:32:01.663][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:01.665][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:01.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.675][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.676][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:01.677][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:01.677][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:01.678][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.679][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.680][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.680][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.681][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.682][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.683][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.683][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.684][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.685][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.686][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.686][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.687][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.688][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.688][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.689][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:01.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.699][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2021-12-11 09:32:01.700][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:01.701][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:01.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.725][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.726][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.727][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.728][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:01.729][private$selectByRange] Filtering on field "molecular.mass", with range: [822.7221, 822.9421].
biodb.DEBUG[2021-12-11 09:32:01.730][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:01.732][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:01.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.743][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.748][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:01.749][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:01.749][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:01.750][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.751][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.752][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.753][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.754][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.754][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.755][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.756][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.757][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.761][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.763][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.764][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.765][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.766][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.767][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.768][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:01.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.780][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [15939].
biodb.DEBUG[2021-12-11 09:32:01.781][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:01.782][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:01.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.824][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.825][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.826][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.827][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:01.828][private$selectByRange] Filtering on field "molecular.mass", with range: [169.002, 169.022].
biodb.DEBUG[2021-12-11 09:32:01.830][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:01.832][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:01.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.844][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.845][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:01.846][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:01.847][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:01.848][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.849][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.850][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.850][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.851][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.852][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.853][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.854][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.855][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.855][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.856][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.857][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.858][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.859][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.859][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.860][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:01.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.872][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2021-12-11 09:32:01.873][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:01.873][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:01.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.914][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.915][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.916][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.917][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:01.918][private$selectByRange] Filtering on field "molecular.mass", with range: [822.9221, 822.9421].
biodb.DEBUG[2021-12-11 09:32:01.920][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:01.921][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:01.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.932][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.933][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:01.934][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:01.935][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:01.935][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.936][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.937][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.938][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.938][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.939][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.940][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.941][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.942][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.942][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.943][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:01.944][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.945][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.945][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.946][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.947][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:01.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:01.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:01.957][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [15939].
biodb.DEBUG[2021-12-11 09:32:01.958][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:01.959][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:01.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:01.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:01.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:01.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:01.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:01.993][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.994][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:01.994][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:01.995][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:01.997][private$selectByRange] Filtering on field "molecular.mass", with range: [169.002, 169.222].
biodb.DEBUG[2021-12-11 09:32:02.002][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:02.004][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:02.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.015][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.016][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:02.017][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:02.017][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:02.018][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.019][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.020][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.021][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.021][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.022][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.023][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.024][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.024][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.025][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.026][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.027][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.027][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.028][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.029][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.030][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:02.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.040][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2021-12-11 09:32:02.040][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:02.041][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:02.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.067][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:02.068][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:02.069][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.069][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:02.071][private$selectByRange] Filtering on field "molecular.mass", with range: [822.9221, 823.1421].
biodb.DEBUG[2021-12-11 09:32:02.072][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:02.074][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:02.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.085][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.086][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:02.087][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:02.088][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:02.088][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.089][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.090][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.091][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.091][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.092][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.093][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.094][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.095][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.095][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.096][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.097][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.098][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.098][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.099][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.100][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:02.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.114][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [15939].
biodb.DEBUG[2021-12-11 09:32:02.115][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:02.116][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:02.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.151][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:02.152][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:02.153][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.153][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:02.155][private$selectByRange] Filtering on field "molecular.mass", with range: [168.802, 169.022].
biodb.DEBUG[2021-12-11 09:32:02.156][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:02.158][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:02.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.169][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.170][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:02.171][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:02.171][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:02.172][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.173][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.174][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.174][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.175][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.176][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.177][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.177][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.178][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.179][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.180][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.180][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.181][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.182][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.183][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.183][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:02.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.194][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2021-12-11 09:32:02.195][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:02.195][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:02.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.229][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:02.231][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:02.232][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.232][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:02.234][private$selectByRange] Filtering on field "molecular.mass", with range: [822.7221, 822.9421].
biodb.DEBUG[2021-12-11 09:32:02.236][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:02.238][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:02.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.249][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.250][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:02.251][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:02.251][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:02.252][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.253][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.254][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.255][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.255][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.256][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.257][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.258][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.259][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.259][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.260][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.261][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.262][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.262][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.263][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.264][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:02.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.274][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [15939].
biodb.DEBUG[2021-12-11 09:32:02.275][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:02.276][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:02.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.310][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:02.311][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:02.312][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.313][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:02.314][private$selectByRange] Filtering on field "molecular.mass", with range: [169.002, 169.022].
biodb.DEBUG[2021-12-11 09:32:02.316][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:02.317][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:02.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.328][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.329][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:02.330][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:02.331][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:02.331][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.332][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.333][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.334][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.334][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.335][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.336][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.337][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.337][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.342][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.343][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.344][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.345][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.346][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.346][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.347][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:02.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.358][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2021-12-11 09:32:02.359][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:02.359][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:02.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.385][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:02.386][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:02.386][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.387][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:02.389][private$selectByRange] Filtering on field "molecular.mass", with range: [822.9221, 822.9421].
biodb.DEBUG[2021-12-11 09:32:02.390][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:02.392][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:02.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.403][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.404][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:02.404][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:02.405][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:02.406][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.407][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.407][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.408][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.409][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.410][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.410][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.411][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.412][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.413][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.413][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.414][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.415][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.416][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.416][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.417][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:02.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.427][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [15939].
biodb.DEBUG[2021-12-11 09:32:02.428][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:02.429][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:02.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.468][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:02.469][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:02.470][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.471][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:02.472][private$selectByRange] Filtering on field "molecular.mass", with range: [169.002, 169.222].
biodb.DEBUG[2021-12-11 09:32:02.474][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:02.476][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:02.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.487][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.488][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:02.488][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:02.489][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:02.490][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.490][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.491][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.492][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.493][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.494][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.494][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.495][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.496][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.497][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.497][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.498][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.499][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.500][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.500][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.501][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:02.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.511][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2021-12-11 09:32:02.512][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:02.513][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:02.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.538][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:02.539][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:02.540][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.541][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:02.542][private$selectByRange] Filtering on field "molecular.mass", with range: [822.9221, 823.1421].
biodb.DEBUG[2021-12-11 09:32:02.544][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:02.546][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:02.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.557][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.557][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:02.558][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:02.559][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:02.560][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.560][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.561][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.562][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.563][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.563][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.568][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.569][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.570][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.571][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.572][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.573][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.574][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.574][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.575][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.576][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:02.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.586][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [15939].
biodb.DEBUG[2021-12-11 09:32:02.587][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:02.588][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2021-12-11 09:32:02.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:02.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.647][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.648][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.648][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.649][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:02.651][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [168.76201, 168.98201].
biodb.DEBUG[2021-12-11 09:32:02.652][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:02.654][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:02.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.665][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.666][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:02.666][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:02.667][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:02.668][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.669][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.669][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.670][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.671][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.672][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.672][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.673][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.674][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.675][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.675][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.676][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.677][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.682][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.683][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.684][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:02.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.695][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2021-12-11 09:32:02.695][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:02.696][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:02.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.721][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.722][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.723][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.724][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:02.725][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [822.1938, 822.4138].
biodb.DEBUG[2021-12-11 09:32:02.727][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:02.728][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:02.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.739][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.740][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:02.741][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:02.742][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:02.742][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.743][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.744][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.745][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.745][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.746][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.747][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.748][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.748][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.749][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.750][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.751][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.752][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.752][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.753][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.754][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:02.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.764][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [15939].
biodb.DEBUG[2021-12-11 09:32:02.765][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:02.766][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:02.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.805][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.806][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.807][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.807][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:02.809][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [168.96201, 168.98201].
biodb.DEBUG[2021-12-11 09:32:02.810][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:02.812][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:02.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.823][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.824][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:02.825][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:02.826][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:02.826][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.827][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.828][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.829][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.829][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.830][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.831][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.832][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.832][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.833][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.834][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.835][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.835][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.836][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.837][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.838][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:02.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.848][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2021-12-11 09:32:02.849][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:02.849][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:02.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.875][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.876][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.876][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.877][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:02.879][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [822.3938, 822.4138].
biodb.DEBUG[2021-12-11 09:32:02.880][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:02.882][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:02.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.893][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.894][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:02.894][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:02.895][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:02.896][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.897][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.897][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.898][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.899][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.900][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.901][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.901][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.902][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.907][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.908][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.909][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.910][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.911][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.911][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.912][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:02.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.923][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [15939].
biodb.DEBUG[2021-12-11 09:32:02.923][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:02.924][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:02.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.959][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.960][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:02.961][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.961][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:02.963][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [168.96201, 169.18201].
biodb.DEBUG[2021-12-11 09:32:02.964][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:02.966][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:02.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:02.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:02.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:02.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:02.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:02.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.977][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.978][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:02.979][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:02.979][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:02.980][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.981][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.982][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.982][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.983][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.984][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.985][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.985][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.986][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.987][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.988][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:02.988][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.989][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.990][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.991][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.991][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:02.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:02.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:02.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:02.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.002][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2021-12-11 09:32:03.003][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:03.003][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:03.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:03.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:03.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:03.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:03.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:03.033][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.034][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.035][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.036][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:03.037][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [822.3938, 822.6138].
biodb.DEBUG[2021-12-11 09:32:03.039][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:03.041][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:03.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:03.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:03.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:03.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:03.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:03.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.052][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.052][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:03.053][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:03.054][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:03.055][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.055][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.056][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.057][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.058][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.058][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.059][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.060][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.061][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.061][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.062][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.063][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.064][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.064][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.065][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.066][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:03.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.076][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [15939].
biodb.DEBUG[2021-12-11 09:32:03.077][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:03.077][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:03.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:03.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:03.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:03.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:03.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:03.111][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.112][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.112][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.113][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:03.115][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [168.76201, 168.98201].
biodb.DEBUG[2021-12-11 09:32:03.116][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:03.118][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:03.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:03.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:03.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:03.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:03.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:03.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.134][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.134][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:03.135][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:03.136][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:03.137][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.138][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.139][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.139][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.140][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.141][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.142][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.142][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.143][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.144][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.145][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.145][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.146][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.147][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.148][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.148][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:03.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.159][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2021-12-11 09:32:03.159][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:03.160][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:03.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:03.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:03.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:03.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:03.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:03.185][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.186][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.187][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.188][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:03.189][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [822.1938, 822.4138].
biodb.DEBUG[2021-12-11 09:32:03.190][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:03.192][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:03.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:03.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:03.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:03.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:03.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:03.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.203][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.204][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:03.205][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:03.205][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:03.206][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.207][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.208][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.208][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.209][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.210][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.211][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.211][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.212][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.213][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.214][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.214][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.215][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.216][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.217][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.217][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:03.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.228][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [15939].
biodb.DEBUG[2021-12-11 09:32:03.228][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:03.229][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:03.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:03.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:03.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:03.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:03.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:03.268][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.269][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.270][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.271][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:03.272][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [168.96201, 168.98201].
biodb.DEBUG[2021-12-11 09:32:03.274][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:03.275][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:03.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:03.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:03.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:03.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:03.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:03.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.286][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.287][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:03.288][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:03.288][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:03.289][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.290][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.291][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.291][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.292][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.293][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.294][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.294][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.295][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.296][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.297][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.297][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.298][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.299][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.300][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.300][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:03.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2021-12-11 09:32:03.311][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:03.312][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:03.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:03.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:03.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:03.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:03.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:03.337][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.338][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.339][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.340][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:03.341][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [822.3938, 822.4138].
biodb.DEBUG[2021-12-11 09:32:03.342][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:03.344][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:03.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:03.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:03.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:03.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:03.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:03.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.360][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.361][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:03.362][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:03.362][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:03.363][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.364][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.365][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.366][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.366][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.367][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.368][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.369][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.369][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.370][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.371][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.372][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.372][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.373][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.374][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.375][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:03.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.385][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [15939].
biodb.DEBUG[2021-12-11 09:32:03.386][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:03.386][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:03.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:03.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:03.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:03.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:03.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:03.420][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.421][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.422][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.423][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:03.424][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [168.96201, 169.18201].
biodb.DEBUG[2021-12-11 09:32:03.426][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:03.427][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:03.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:03.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:03.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:03.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:03.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:03.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.439][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.439][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:03.440][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:03.441][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:03.441][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.442][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.443][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.444][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.445][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.445][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.446][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.447][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.448][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.448][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.449][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.450][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.451][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.451][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.452][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.453][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:03.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.468][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [1018].
biodb.DEBUG[2021-12-11 09:32:03.469][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:03.470][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:03.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:03.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:03.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:03.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:03.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:03.496][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.497][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.497][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.498][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:03.499][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [822.3938, 822.6138].
biodb.DEBUG[2021-12-11 09:32:03.501][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:03.503][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:03.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:03.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:03.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:03.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:03.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:03.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.513][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.514][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:03.515][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:03.516][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:03.516][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.517][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.518][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.519][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.519][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.520][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.521][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.521][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.522][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.523][private$selectFields] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.524][private$organizeFieldsByGroups] Fields [1]: "comp.csv.file.id"
biodb.TRACE[2021-12-11 09:32:03.524][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.525][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.526][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.527][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.527][private$organizeFieldsByGroups] Groups [2]: "comp.csv.file.id, list()"
biodb.TRACE[2021-12-11 09:32:03.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.537][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [comp.csv.file.id] [15939].
biodb.DEBUG[2021-12-11 09:32:03.538][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:03.539][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2021-12-11 09:32:03.546][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:03.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:03.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.550][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:03.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:03.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2021-12-11 09:32:03.553][biodb::testThat] 
biodb.INFO [2021-12-11 09:32:03.554][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2021-12-11 09:32:03.555][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-11 09:32:03.555][biodb::testThat] 
biodb.TRACE[2021-12-11 09:32:03.558][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2021-12-11 09:32:03.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2021-12-11 09:32:03.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.561][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2021-12-11 09:32:03.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2021-12-11 09:32:03.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:03.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:03.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:03.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:03.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:03.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:03.618][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.619][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.620][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.620][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:03.622][private$selectByRange] Filtering on field "molecular.mass", with range: [169.002, 169.022].
biodb.DEBUG[2021-12-11 09:32:03.623][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:03.625][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:03.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:03.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:03.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:03.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:03.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:03.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:03.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:03.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:03.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:03.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.642][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:03.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:03.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.645][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:03.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:03.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.648][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:03.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:03.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:03.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:03.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.654][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.657][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.671][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:03.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:03.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:03.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:03.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:03.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:03.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:03.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:03.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.688][private$selectFields] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:03.688][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:03.689][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:03.690][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:03.691][private$selectFields] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:03.692][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:03.693][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:03.693][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.694][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.695][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.696][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.696][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.697][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.698][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:03.699][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:03.699][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.700][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.701][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:03.701][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:03.702][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.703][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.704][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.704][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.705][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.706][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.707][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.707][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.708][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.709][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.710][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.710][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.711][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.712][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.712][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:03.713][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:03.714][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.715][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.715][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:03.716][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:03.717][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.718][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.718][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:03.719][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:03.720][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.720][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.721][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.722][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.723][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.723][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.724][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:03.725][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:03.726][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.726][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.727][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:03.728][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:03.729][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.729][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.730][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.731][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.732][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.732][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.733][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.734][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.734][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.735][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.736][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.737][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.737][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.738][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.739][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:03.740][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:03.740][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.741][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.742][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:03.742][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:03.743][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.744][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.745][private$selectFields] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:03.745][private$organizeFieldsByGroups] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:03.746][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:03.747][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:03.748][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.748][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.749][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.750][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.751][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.751][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.752][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:03.753][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:03.753][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.754][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.755][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:03.756][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:03.756][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.757][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.758][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.759][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.759][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.760][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.761][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.762][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.762][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.763][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.764][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.765][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.765][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.766][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.767][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:03.767][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:03.768][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.769][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.770][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:03.770][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:03.771][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.772][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.773][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.csv.file.id", "description", "formula", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "name", "smiles"), list()"
biodb.TRACE[2021-12-11 09:32:03.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:03.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:03.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:03.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:03.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:03.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:03.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.796][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:03.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:03.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.799][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:03.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:03.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.803][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:03.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:03.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.806][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:03.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:03.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.809][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:03.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:03.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:03.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:03.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.815][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.818][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.821][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.842][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:03.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:03.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:03.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:03.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.848][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:03.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:03.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:03.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:03.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.854][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:03.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:03.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:03.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:03.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.865][private$entriesToListOfDataframes] Entry converted to data frame: [1, 9]: [accession, comp.csv.file.id, description, formula, kegg.compound.id, ...] [1018, 1018, , C2H8AsNO3, C07279, ...].
biodb.DEBUG[2021-12-11 09:32:03.866][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:03.866][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:03.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:03.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:03.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:03.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:03.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:03.892][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.893][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.894][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.895][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:03.896][private$selectByRange] Filtering on field "molecular.mass", with range: [822.9221, 822.9421].
biodb.DEBUG[2021-12-11 09:32:03.897][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:03.899][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:03.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:03.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:03.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:03.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:03.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:03.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:03.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:03.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:03.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:03.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.921][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:03.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:03.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.925][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:03.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:03.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:03.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:03.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.931][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:03.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:03.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.934][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.937][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.952][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:03.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:03.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:03.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:03.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.958][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:03.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:03.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:03.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:03.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.964][private$selectFields] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:03.965][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:03.965][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:03.966][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:03.967][private$selectFields] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:03.968][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:03.969][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:03.969][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.970][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.971][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.972][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.972][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.973][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.974][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:03.975][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:03.975][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.976][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.977][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:03.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:03.978][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.979][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.980][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.981][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:03.981][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.982][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.983][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.984][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:03.984][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.985][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.986][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.987][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:03.988][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.988][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.989][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:03.990][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:03.991][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.991][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.992][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:03.993][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:03.994][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.994][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.995][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:03.996][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:03.997][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:03.997][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:03.998][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:03.999][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.000][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.000][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.001][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:04.002][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:04.003][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.003][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.004][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:04.005][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:04.006][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.006][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.007][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.008][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.009][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.009][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.010][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.011][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.012][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.012][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.017][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.018][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.019][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.020][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.021][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:04.022][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:04.023][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.023][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.024][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:04.025][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:04.026][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.027][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.027][private$selectFields] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:04.028][private$organizeFieldsByGroups] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:04.029][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:04.030][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:04.030][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.031][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.032][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.033][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.033][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.034][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.035][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:04.036][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:04.036][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.037][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.038][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:04.039][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:04.039][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.040][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.041][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.042][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.042][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.043][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.044][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.045][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.045][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.046][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.047][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.048][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.048][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.049][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.050][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:04.051][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:04.051][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.052][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.053][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:04.054][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:04.054][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.055][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.056][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.csv.file.id", "description", "formula", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "name", "smiles"), list()"
biodb.TRACE[2021-12-11 09:32:04.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:04.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:04.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:04.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:04.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:04.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:04.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.075][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:04.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:04.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.078][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:04.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:04.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.081][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:04.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:04.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.084][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:04.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:04.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.087][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:04.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:04.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.090][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:04.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:04.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.093][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.097][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.099][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:04.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:04.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.128][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:04.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:04.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:04.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:04.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.135][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:04.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:04.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.138][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:04.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:04.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.141][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:04.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:04.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.148][private$entriesToListOfDataframes] Entry converted to data frame: [1, 9]: [accession, comp.csv.file.id, description, formula, kegg.compound.id, ...] [15939, 15939, A  triterpenoid saponin that is the  glucosiduronide derivative of 3beta-hydroxy-11-oxoolean-12-en-30-oic acid., C42H62O16, C02284, ...].
biodb.DEBUG[2021-12-11 09:32:04.149][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:04.149][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:04.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:04.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:04.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:04.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:04.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:04.179][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.180][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.181][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.181][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:04.183][private$selectByRange] Filtering on field "molecular.mass", with range: [169.002, 169.022].
biodb.DEBUG[2021-12-11 09:32:04.184][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:04.186][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:04.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:04.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:04.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:04.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:04.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:04.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:04.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:04.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:04.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:04.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.203][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:04.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:04.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.206][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:04.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:04.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:04.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:04.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.212][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:04.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:04.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.216][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.219][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.234][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:04.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:04.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.241][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:04.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:04.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:04.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:04.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:04.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:04.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.251][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-11 09:32:04.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-11 09:32:04.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.254][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-11 09:32:04.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-11 09:32:04.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.257][private$selectFields] Fields [10]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles, peak.attr"
biodb.TRACE[2021-12-11 09:32:04.258][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:04.258][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:04.259][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:04.260][private$selectFields] Fields [10]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles, peak.attr"
biodb.TRACE[2021-12-11 09:32:04.261][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:04.261][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:04.262][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.263][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.264][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.264][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.265][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.266][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.267][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:04.267][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:04.268][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.269][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.269][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:04.270][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:04.271][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.272][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.272][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.273][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.274][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.275][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.275][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.276][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.277][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.278][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.278][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.279][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.280][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.281][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.281][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:04.282][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:04.283][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.284][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.284][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:04.285][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:04.286][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.286][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.287][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-11 09:32:04.288][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-11 09:32:04.289][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.289][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.290][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:04.291][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:04.292][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.292][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.293][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.294][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.295][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.295][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.296][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:04.297][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:04.298][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.298][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.299][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:04.300][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:04.301][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.301][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.302][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.303][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.303][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.304][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.305][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.306][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.306][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.307][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.308][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.309][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.309][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.310][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.311][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:04.312][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:04.312][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.313][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.314][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:04.315][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:04.315][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.316][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.317][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-11 09:32:04.318][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-11 09:32:04.318][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.319][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.320][private$selectFields] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:04.321][private$organizeFieldsByGroups] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:04.322][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:04.322][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:04.323][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.324][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.324][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.325][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.326][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.327][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.327][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:04.328][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:04.329][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.330][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.330][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:04.331][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:04.332][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.333][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.333][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.334][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.335][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.336][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.336][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.337][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.338][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.339][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.339][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.340][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.341][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.342][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.342][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:04.343][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:04.348][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.349][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.350][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:04.351][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:04.352][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.352][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.353][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.csv.file.id", "description", "formula", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "name", "smiles"), list()"
biodb.TRACE[2021-12-11 09:32:04.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:04.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:04.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:04.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:04.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:04.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:04.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.380][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:04.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:04.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.383][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:04.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:04.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.387][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:04.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:04.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.390][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:04.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:04.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.394][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:04.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:04.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:04.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:04.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.401][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.405][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.408][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:04.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:04.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:04.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:04.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.440][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:04.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:04.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:04.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:04.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:04.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:04.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.450][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:04.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:04.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.458][private$entriesToListOfDataframes] Entry converted to data frame: [1, 9]: [accession, comp.csv.file.id, description, formula, kegg.compound.id, ...] [1018, 1018, , C2H8AsNO3, C07279, ...].
biodb.DEBUG[2021-12-11 09:32:04.459][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:04.460][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:04.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:04.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:04.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:04.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:04.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:04.506][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.507][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.508][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.508][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:04.510][private$selectByRange] Filtering on field "molecular.mass", with range: [822.9221, 822.9421].
biodb.DEBUG[2021-12-11 09:32:04.511][private$selectByRange] 13 values to filter on field molecular.mass.
biodb.DEBUG[2021-12-11 09:32:04.513][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:04.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:04.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:04.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:04.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:04.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:04.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:04.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:04.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:04.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:04.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.530][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:04.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:04.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.533][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:04.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:04.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.637][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:04.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:04.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.641][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:04.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:04.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.645][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.649][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:04.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:04.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.668][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:04.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:04.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:04.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:04.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:04.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:04.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.677][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-11 09:32:04.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-11 09:32:04.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.680][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-11 09:32:04.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-11 09:32:04.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.683][private$selectFields] Fields [10]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles, peak.attr"
biodb.TRACE[2021-12-11 09:32:04.684][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:04.684][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:04.685][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:04.686][private$selectFields] Fields [10]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles, peak.attr"
biodb.TRACE[2021-12-11 09:32:04.687][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:04.687][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:04.688][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.689][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.690][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.690][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.691][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.692][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.693][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:04.693][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:04.694][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.695][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.696][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:04.697][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:04.697][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.698][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.699][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.700][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.700][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.865][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.866][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.867][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.867][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.868][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.869][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.869][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.870][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.871][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.871][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:04.872][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:04.873][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.874][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.874][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:04.875][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:04.876][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.876][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.877][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-11 09:32:04.878][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-11 09:32:04.878][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.879][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.880][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:04.881][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:04.881][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.882][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.883][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.883][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.884][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.885][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.885][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:04.886][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:04.887][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.887][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.888][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:04.889][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:04.890][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.890][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.891][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.892][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.892][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.893][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.894][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.895][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.895][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.896][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.897][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.897][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.898][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.899][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.899][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:04.900][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:04.901][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.901][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.902][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:04.903][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:04.904][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.904][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.905][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-11 09:32:04.906][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-11 09:32:04.906][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.907][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.908][private$selectFields] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:04.908][private$organizeFieldsByGroups] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:04.909][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:04.910][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:04.911][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.911][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.912][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.913][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.913][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.914][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.915][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:04.916][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:04.916][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.917][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.918][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:04.918][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:04.919][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.920][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.920][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.921][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.922][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.922][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.923][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.924][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.925][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.925][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.926][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.927][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.927][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.928][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.929][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:04.929][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:04.930][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.931][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.932][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:04.932][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:04.933][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.934][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.934][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.csv.file.id", "description", "formula", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "name", "smiles"), list()"
biodb.TRACE[2021-12-11 09:32:04.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:04.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:04.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:04.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:04.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:04.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:04.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:04.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.953][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:04.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:04.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.956][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:04.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:04.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.958][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:04.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:04.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.961][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:04.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:04.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:04.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:04.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.967][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:04.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:04.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.970][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.973][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.977][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:04.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:04.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:04.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:04.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:04.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.003][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.010][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.013][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.023][private$entriesToListOfDataframes] Entry converted to data frame: [1, 9]: [accession, comp.csv.file.id, description, formula, kegg.compound.id, ...] [15939, 15939, A  triterpenoid saponin that is the  glucosiduronide derivative of 3beta-hydroxy-11-oxoolean-12-en-30-oic acid., C42H62O16, C02284, ...].
biodb.DEBUG[2021-12-11 09:32:05.024][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:05.025][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2021-12-11 09:32:05.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:05.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:05.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:05.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:05.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:05.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:05.085][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.086][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.087][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.088][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:05.089][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [168.96201, 168.98201].
biodb.DEBUG[2021-12-11 09:32:05.091][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:05.093][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:05.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:05.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:05.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:05.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:05.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:05.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.112][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.116][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.122][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.126][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.129][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.152][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.155][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.158][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.161][private$selectFields] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:05.161][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:05.162][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:05.163][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:05.163][private$selectFields] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:05.164][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.165][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.165][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.166][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.167][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.168][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.168][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.169][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.170][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.170][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.171][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.172][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.172][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.173][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.174][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.175][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.175][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.176][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.177][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.177][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.178][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.179][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.179][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.180][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.181][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.182][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.182][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.183][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.184][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.184][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.185][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.186][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.187][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.187][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.188][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.189][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.189][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.190][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.191][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.191][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.192][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.193][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.194][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.194][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.195][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.196][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.196][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.197][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.198][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.199][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.199][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.200][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.201][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.201][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.202][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.203][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.203][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.204][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.205][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.205][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.206][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.207][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.208][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.208][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.209][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.210][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.210][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.211][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.212][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.212][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.213][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.214][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.215][private$selectFields] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:05.215][private$organizeFieldsByGroups] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:05.216][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.217][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.217][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.218][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.219][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.220][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.220][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.221][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.222][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.222][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.223][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.224][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.225][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.225][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.226][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.227][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.227][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.228][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.229][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.229][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.230][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.231][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.232][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.232][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.233][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.234][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.234][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.235][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.236][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.237][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.237][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.238][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.239][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.239][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.240][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.241][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.242][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.csv.file.id", "description", "formula", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "name", "smiles"), list()"
biodb.TRACE[2021-12-11 09:32:05.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.260][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.263][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.266][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.269][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.272][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.275][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.278][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.281][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.284][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.305][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.308][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.311][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.314][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.317][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.320][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.326][private$entriesToListOfDataframes] Entry converted to data frame: [1, 9]: [accession, comp.csv.file.id, description, formula, kegg.compound.id, ...] [1018, 1018, , C2H8AsNO3, C07279, ...].
biodb.DEBUG[2021-12-11 09:32:05.327][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:05.327][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:05.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:05.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:05.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:05.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:05.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:05.352][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.353][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.354][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.355][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:05.356][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [822.3938, 822.4138].
biodb.DEBUG[2021-12-11 09:32:05.357][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:05.359][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:05.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:05.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:05.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:05.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:05.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:05.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.376][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.379][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.382][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.388][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.390][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.417][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.420][private$selectFields] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:05.421][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:05.422][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:05.422][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:05.423][private$selectFields] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:05.424][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.425][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.425][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.426][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.427][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.427][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.428][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.429][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.429][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.430][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.431][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.432][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.432][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.433][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.434][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.434][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.435][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.436][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.436][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.437][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.438][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.439][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.439][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.440][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.441][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.441][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.442][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.443][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.443][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.444][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.445][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.446][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.446][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.447][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.448][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.448][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.449][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.450][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.451][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.451][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.452][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.453][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.453][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.454][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.455][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.455][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.456][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.457][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.457][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.458][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.459][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.460][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.460][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.461][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.462][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.462][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.463][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.464][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.465][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.465][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.466][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.467][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.467][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.468][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.469][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.470][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.470][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.471][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.472][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.472][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.473][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.474][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.474][private$selectFields] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:05.475][private$organizeFieldsByGroups] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:05.476][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.477][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.477][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.478][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.479][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.479][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.480][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.481][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.481][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.482][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.483][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.484][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.484][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.485][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.486][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.486][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.487][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.488][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.488][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.489][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.490][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.491][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.491][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.492][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.493][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.493][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.494][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.495][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.496][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.496][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.497][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.498][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.498][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.499][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.500][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.500][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.501][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.csv.file.id", "description", "formula", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "name", "smiles"), list()"
biodb.TRACE[2021-12-11 09:32:05.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.520][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.523][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.526][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.529][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.535][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.538][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.541][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.544][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.577][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.580][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.586][private$entriesToListOfDataframes] Entry converted to data frame: [1, 9]: [accession, comp.csv.file.id, description, formula, kegg.compound.id, ...] [15939, 15939, A  triterpenoid saponin that is the  glucosiduronide derivative of 3beta-hydroxy-11-oxoolean-12-en-30-oic acid., C42H62O16, C02284, ...].
biodb.DEBUG[2021-12-11 09:32:05.587][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:05.587][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:05.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:05.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:05.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:05.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:05.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:05.616][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.617][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.617][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.618][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:05.619][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [168.96201, 168.98201].
biodb.DEBUG[2021-12-11 09:32:05.621][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:05.623][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:05.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:05.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:05.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:05.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:05.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:05.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.639][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.642][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.648][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.651][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.654][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.684][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-11 09:32:05.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-11 09:32:05.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.687][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-11 09:32:05.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-11 09:32:05.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.689][private$selectFields] Fields [10]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles, peak.attr"
biodb.TRACE[2021-12-11 09:32:05.690][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:05.691][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:05.692][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:05.692][private$selectFields] Fields [10]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles, peak.attr"
biodb.TRACE[2021-12-11 09:32:05.693][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.694][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.694][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.695][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.696][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.697][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.697][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.698][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.699][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.699][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.700][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.701][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.701][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.702][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.703][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.704][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.704][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.705][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.706][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.706][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.707][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.708][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.709][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.709][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.710][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.711][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.711][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.712][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.713][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.713][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.714][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.715][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.716][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.716][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.717][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.718][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.718][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-11 09:32:05.719][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-11 09:32:05.720][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.720][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.721][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.722][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.723][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.723][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.724][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.725][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.725][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.726][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.727][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.728][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.728][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.729][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.730][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.730][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.731][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.732][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.732][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.733][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.734][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.734][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.735][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.736][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.737][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.737][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.738][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.739][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.739][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.740][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.741][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.742][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.742][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.743][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.744][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.744][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.745][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.746][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.746][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-11 09:32:05.747][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-11 09:32:05.748][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.749][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.749][private$selectFields] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:05.750][private$organizeFieldsByGroups] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:05.751][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.752][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.752][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.753][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.754][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.754][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.755][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.756][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.756][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.757][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.758][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.758][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.759][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.760][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.761][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.761][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.762][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.763][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.764][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.764][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.765][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.766][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.766][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.767][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.768][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.768][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.769][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.770][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.771][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.771][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.772][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.773][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.774][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.774][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.775][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.776][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.776][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.csv.file.id", "description", "formula", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "name", "smiles"), list()"
biodb.TRACE[2021-12-11 09:32:05.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.795][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.798][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.801][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.804][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.807][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.813][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.816][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.819][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.840][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.846][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.852][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.861][private$entriesToListOfDataframes] Entry converted to data frame: [1, 9]: [accession, comp.csv.file.id, description, formula, kegg.compound.id, ...] [1018, 1018, , C2H8AsNO3, C07279, ...].
biodb.DEBUG[2021-12-11 09:32:05.862][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:05.863][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2021-12-11 09:32:05.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:05.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:05.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:05.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:05.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:05.887][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.888][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.889][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.890][ef$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:05.891][private$selectByRange] Filtering on field "monoisotopic.mass", with range: [822.3938, 822.4138].
biodb.DEBUG[2021-12-11 09:32:05.892][private$selectByRange] 13 values to filter on field monoisotopic.mass.
biodb.DEBUG[2021-12-11 09:32:05.894][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2021-12-11 09:32:05.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:05.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:05.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:05.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:05.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:05.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.911][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.914][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.917][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.923][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.926][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.929][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.946][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.951][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.954][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-11 09:32:05.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-11 09:32:05.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.957][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-11 09:32:05.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-11 09:32:05.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.960][private$selectFields] Fields [10]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles, peak.attr"
biodb.TRACE[2021-12-11 09:32:05.961][private$selectFields] 
biodb.TRACE[2021-12-11 09:32:05.961][private$selectFields] Fields is null: FALSE
biodb.TRACE[2021-12-11 09:32:05.962][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2021-12-11 09:32:05.963][private$selectFields] Fields [10]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles, peak.attr"
biodb.TRACE[2021-12-11 09:32:05.963][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.964][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.965][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.966][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.966][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.967][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.968][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.968][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.969][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.970][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.971][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.971][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.972][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:05.973][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:05.973][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.974][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.975][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.976][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:05.976][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.977][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.978][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.978][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:05.979][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.980][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.981][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.981][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:05.982][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.983][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.983][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:05.984][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:05.985][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.985][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.986][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:05.987][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:05.988][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.988][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.989][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-11 09:32:05.990][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-11 09:32:05.990][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.991][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.992][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:05.993][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:05.993][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.994][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.995][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.995][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:05.996][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:05.997][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:05.998][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:05.998][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:05.999][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.000][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.000][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:06.001][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:06.002][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.002][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.003][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.004][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.005][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.005][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.006][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.007][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.007][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.008][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.009][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.010][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.010][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.011][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.012][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:06.012][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:06.013][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.014][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.014][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:06.015][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:06.016][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.017][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.017][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2021-12-11 09:32:06.018][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2021-12-11 09:32:06.019][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.019][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.020][private$selectFields] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:06.021][private$organizeFieldsByGroups] Fields [9]: "accession, comp.csv.file.id, description, formula, kegg.compound.id, molecular.mass, monoisotopic.mass, name, smiles"
biodb.TRACE[2021-12-11 09:32:06.022][ef$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.022][ef$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.023][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.024][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.024][ef$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.025][ef$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.026][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.026][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.027][ef$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:06.028][ef$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:06.029][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.029][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.030][ef$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:06.031][ef$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:06.032][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.032][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.033][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.034][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.034][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.035][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.036][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.037][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.037][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.038][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.039][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.039][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.040][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.041][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.042][ef$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:06.042][ef$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:06.043][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.044][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.045][ef$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:06.045][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:06.046][ef$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.047][ef$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.047][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.csv.file.id", "description", "formula", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "name", "smiles"), list()"
biodb.TRACE[2021-12-11 09:32:06.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.066][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:06.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:06.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.069][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:06.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:06.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.072][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:06.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:06.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.075][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:06.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:06.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.078][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:06.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:06.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.081][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:06.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:06.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.084][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.087][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.090][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:06.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:06.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.114][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:06.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:06.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:06.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:06.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.120][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:06.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:06.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:06.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:06.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:06.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:06.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.132][private$entriesToListOfDataframes] Entry converted to data frame: [1, 9]: [accession, comp.csv.file.id, description, formula, kegg.compound.id, ...] [15939, 15939, A  triterpenoid saponin that is the  glucosiduronide derivative of 3beta-hydroxy-11-oxoolean-12-en-30-oic acid., C42H62O16, C02284, ...].
biodb.DEBUG[2021-12-11 09:32:06.133][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2021-12-11 09:32:06.133][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2021-12-11 09:32:06.136][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:06.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:06.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.139][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:06.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2021-12-11 09:32:06.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2021-12-11 09:32:06.143][biodb::testThat] 
biodb.INFO [2021-12-11 09:32:06.144][biodb::testThat] Running test function  test.db.copy  (" Database copy works. ").
biodb.INFO [2021-12-11 09:32:06.144][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2021-12-11 09:32:06.145][biodb::testThat] 
biodb.DEBUG[2021-12-11 09:32:06.168][super$initialize] Initialize connector comp.csv.file.1.
biodb.DEBUG[2021-12-11 09:32:06.181][biodb$getFactory()$createConn] Creating new connector comp.csv.file.1 for database class comp.csv.file , with base URL "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/test.db.copy.comp.csv.file.db".
biodb.DEBUG[2021-12-11 09:32:06.184][private$loadEntries] Creating entries from ids [11]: "1390, 1456, 1549, 1894, 1932, 1997, 10561, 16750, 35485, 40304, ...".
biodb.DEBUG[2021-12-11 09:32:06.214][conn$getEntryContent] Get Compound CSV File entry content(s) for 11 id(s)...
biodb.DEBUG[2021-12-11 09:32:06.215][conn$getEntryContent] 11 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/biodb/extdata/chebi_extract.tsv".
biodb.DEBUG[2021-12-11 09:32:06.216][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-11 09:32:06.217][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-11 09:32:06.218][private$doGetEntryContentFromDb] Entry id: 1390, 1456, 1549, 1894, 1932, 1997, 10561, 16750, 35485, 40304, 64679
biodb.DEBUG[2021-12-11 09:32:06.229][private$doGetEntryContentFromDb] Content of first entry: accession	formula	monoisotopic.mass	molecular.mass	kegg.compound.id	name	smiles	description
1390	C8H8O2	136.05243	136.148	C06224	3,4-Dihydroxystyrene	Oc1ccc(C=C)cc1O	
biodb.DEBUG[2021-12-11 09:32:06.237][self$createEntryFromContent] Creating Compound CSV File entries from 11 content(s).
biodb.DEBUG[2021-12-11 09:32:06.238][self$createEntryFromContent] Parsing 11 Compound CSV File entries.
biodb.DEBUG[2021-12-11 09:32:06.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:06.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:06.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:06.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:06.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:06.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:06.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:06.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:06.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:06.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.279][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.282][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:06.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:06.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.291][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:06.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:06.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:06.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:06.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:06.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:06.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.305][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:06.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:06.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.308][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:06.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:06.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:06.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:06.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:06.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:06.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:06.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:06.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.353][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:06.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:06.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.356][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:06.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:06.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.380][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.383][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:06.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:06.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:06.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:06.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.397][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:06.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:06.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:06.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:06.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.406][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:06.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:06.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.409][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:06.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:06.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:06.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:06.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:06.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:06.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:06.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:06.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.457][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:06.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:06.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.460][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:06.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:06.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.483][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.486][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:06.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:06.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:06.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:06.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.501][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:06.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:06.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:06.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:06.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.509][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:06.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:06.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.512][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:06.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:06.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:06.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:06.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:06.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:06.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:06.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:06.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.556][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:06.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:06.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:06.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:06.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.583][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.586][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:06.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:06.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:06.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:06.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:06.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:06.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:06.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:06.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.609][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:06.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:06.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.612][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:06.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:06.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:06.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:06.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:06.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:06.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:06.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:06.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.656][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:06.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:06.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:06.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:06.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.687][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.690][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.696][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:06.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:06.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:06.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:06.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.705][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:06.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:06.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.708][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:06.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:06.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.713][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:06.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:06.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.716][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:06.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:06.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:06.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:06.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:06.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:06.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:06.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:06.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.758][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:06.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:06.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.761][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:06.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:06.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.784][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.787][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:06.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:06.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:06.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:06.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:06.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:06.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:06.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:06.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.810][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:06.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:06.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.813][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:06.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:06.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:06.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:06.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:06.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:06.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:06.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:06.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.857][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:06.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:06.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:06.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:06.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.884][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.887][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:06.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:06.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:06.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:06.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:06.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:06.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:06.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:06.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.911][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:06.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:06.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.914][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:06.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:06.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:06.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:06.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:06.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:06.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:06.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:06.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:06.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:06.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:06.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.961][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:06.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:06.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:06.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:06.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:06.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:06.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.987][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.990][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:06.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:06.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:06.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:06.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:06.998][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:06.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:07.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:07.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:07.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:07.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:07.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.012][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:07.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:07.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.015][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:07.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:07.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:07.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:07.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:07.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:07.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:07.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:07.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:07.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:07.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:07.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:07.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:07.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:07.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:07.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:07.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:07.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:07.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:07.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.085][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:07.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:07.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.088][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:07.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:07.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:07.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:07.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:07.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:07.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:07.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:07.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.105][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:07.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:07.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.108][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:07.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:07.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:07.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:07.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:07.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:07.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:07.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.152][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:07.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:07.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.155][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:07.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:07.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:07.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:07.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:07.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:07.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:07.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:07.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:07.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:07.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.178][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:07.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:07.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:07.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:07.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:07.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:07.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.190][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:07.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:07.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.193][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:07.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:07.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.199][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:07.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:07.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.206][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:07.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:07.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:07.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:07.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:07.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:07.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:07.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:07.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:07.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.251][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2021-12-11 09:32:07.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2021-12-11 09:32:07.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:07.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:07.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:07.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2021-12-11 09:32:07.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:07.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:07.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:07.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2021-12-11 09:32:07.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.273][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:07.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2021-12-11 09:32:07.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.276][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:07.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:07.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.279][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2021-12-11 09:32:07.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2021-12-11 09:32:07.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.285][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:07.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:07.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.288][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2021-12-11 09:32:07.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2021-12-11 09:32:07.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.293][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:07.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:07.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.296][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2021-12-11 09:32:07.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2021-12-11 09:32:07.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.424][self$createEntryFromContent] Accession numbers: 1390, 1456, 1549, 1894, 1932, 1997, 10561, 16750, 35485, 40304, 64679.
biodb.TRACE[2021-12-11 09:32:07.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.444][private$loadEntries] Creating entries from ids [1]: "1018".
biodb.DEBUG[2021-12-11 09:32:07.445][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2021-12-11 09:32:07.446][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/test.db.copy.comp.csv.file.db".
biodb.DEBUG[2021-12-11 09:32:07.447][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-11 09:32:07.448][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-11 09:32:07.448][private$doGetEntryContentFromDb] Entry id: 1018
biodb.INFO [2021-12-11 09:32:07.449][private$initDb] Creating empty database.
biodb.DEBUG[2021-12-11 09:32:07.450][self$setField] Set field accession to column(s) accession.
biodb.TRACE[2021-12-11 09:32:07.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.454][self$setPropertyValue] Setting property "parsing.expr" to "accession".
biodb.DEBUG[2021-12-11 09:32:07.471][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2021-12-11 09:32:07.479][self$createEntryFromContent] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2021-12-11 09:32:07.480][self$createEntryFromContent] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2021-12-11 09:32:07.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:07.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:07.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:07.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:07.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:07.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.508][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2021-12-11 09:32:07.509][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.TRACE[2021-12-11 09:32:07.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:07.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:07.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:07.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:07.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:07.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.548][private$loadEntries] Creating entries from ids [1]: "15939".
biodb.DEBUG[2021-12-11 09:32:07.549][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2021-12-11 09:32:07.550][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/test.db.copy.comp.csv.file.db".
biodb.DEBUG[2021-12-11 09:32:07.551][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-11 09:32:07.552][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-11 09:32:07.552][private$doGetEntryContentFromDb] Entry id: 15939
biodb.DEBUG[2021-12-11 09:32:07.554][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2021-12-11 09:32:07.562][self$createEntryFromContent] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2021-12-11 09:32:07.562][self$createEntryFromContent] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2021-12-11 09:32:07.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:07.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:07.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:07.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:07.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:07.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.592][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2021-12-11 09:32:07.593][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.TRACE[2021-12-11 09:32:07.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:07.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:07.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:07.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:07.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:07.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.622][private$loadEntries] Creating entries from ids [1]: "1390".
biodb.DEBUG[2021-12-11 09:32:07.623][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2021-12-11 09:32:07.624][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/test.db.copy.comp.csv.file.db".
biodb.DEBUG[2021-12-11 09:32:07.625][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-11 09:32:07.626][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-11 09:32:07.626][private$doGetEntryContentFromDb] Entry id: 1390
biodb.DEBUG[2021-12-11 09:32:07.628][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2021-12-11 09:32:07.636][self$createEntryFromContent] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2021-12-11 09:32:07.637][self$createEntryFromContent] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2021-12-11 09:32:07.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:07.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:07.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:07.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:07.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:07.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.666][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2021-12-11 09:32:07.667][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.TRACE[2021-12-11 09:32:07.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:07.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:07.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:07.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:07.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:07.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.696][private$loadEntries] Creating entries from ids [1]: "1456".
biodb.DEBUG[2021-12-11 09:32:07.697][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2021-12-11 09:32:07.698][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/test.db.copy.comp.csv.file.db".
biodb.DEBUG[2021-12-11 09:32:07.699][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-11 09:32:07.699][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-11 09:32:07.700][private$doGetEntryContentFromDb] Entry id: 1456
biodb.DEBUG[2021-12-11 09:32:07.701][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2021-12-11 09:32:07.709][self$createEntryFromContent] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2021-12-11 09:32:07.710][self$createEntryFromContent] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2021-12-11 09:32:07.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:07.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:07.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:07.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:07.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:07.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.742][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2021-12-11 09:32:07.743][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.TRACE[2021-12-11 09:32:07.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:07.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:07.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:07.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:07.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:07.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.771][private$loadEntries] Creating entries from ids [1]: "1549".
biodb.DEBUG[2021-12-11 09:32:07.772][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2021-12-11 09:32:07.773][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/test.db.copy.comp.csv.file.db".
biodb.DEBUG[2021-12-11 09:32:07.774][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-11 09:32:07.774][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-11 09:32:07.775][private$doGetEntryContentFromDb] Entry id: 1549
biodb.DEBUG[2021-12-11 09:32:07.776][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2021-12-11 09:32:07.784][self$createEntryFromContent] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2021-12-11 09:32:07.785][self$createEntryFromContent] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2021-12-11 09:32:07.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:07.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:07.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:07.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:07.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:07.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.814][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2021-12-11 09:32:07.814][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.TRACE[2021-12-11 09:32:07.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:07.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:07.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:07.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:07.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:07.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.844][private$loadEntries] Creating entries from ids [1]: "1894".
biodb.DEBUG[2021-12-11 09:32:07.845][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2021-12-11 09:32:07.846][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/test.db.copy.comp.csv.file.db".
biodb.DEBUG[2021-12-11 09:32:07.847][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-11 09:32:07.848][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-11 09:32:07.848][private$doGetEntryContentFromDb] Entry id: 1894
biodb.DEBUG[2021-12-11 09:32:07.850][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2021-12-11 09:32:07.866][self$createEntryFromContent] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2021-12-11 09:32:07.868][self$createEntryFromContent] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2021-12-11 09:32:07.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:07.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:07.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:07.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:07.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:07.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.904][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2021-12-11 09:32:07.905][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.TRACE[2021-12-11 09:32:07.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:07.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:07.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:07.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:07.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:07.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.939][private$loadEntries] Creating entries from ids [1]: "1932".
biodb.DEBUG[2021-12-11 09:32:07.940][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2021-12-11 09:32:07.941][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/test.db.copy.comp.csv.file.db".
biodb.DEBUG[2021-12-11 09:32:07.942][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-11 09:32:07.943][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-11 09:32:07.944][private$doGetEntryContentFromDb] Entry id: 1932
biodb.DEBUG[2021-12-11 09:32:07.946][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2021-12-11 09:32:07.955][self$createEntryFromContent] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2021-12-11 09:32:07.956][self$createEntryFromContent] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2021-12-11 09:32:07.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:07.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:07.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:07.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:07.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:07.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:07.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:07.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:07.990][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2021-12-11 09:32:07.991][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.TRACE[2021-12-11 09:32:07.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:07.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:07.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:07.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:08.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:08.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:08.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:08.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:08.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:08.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:08.037][private$loadEntries] Creating entries from ids [1]: "1997".
biodb.DEBUG[2021-12-11 09:32:08.038][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2021-12-11 09:32:08.039][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/test.db.copy.comp.csv.file.db".
biodb.DEBUG[2021-12-11 09:32:08.040][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-11 09:32:08.040][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-11 09:32:08.041][private$doGetEntryContentFromDb] Entry id: 1997
biodb.DEBUG[2021-12-11 09:32:08.043][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2021-12-11 09:32:08.051][self$createEntryFromContent] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2021-12-11 09:32:08.052][self$createEntryFromContent] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2021-12-11 09:32:08.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:08.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:08.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:08.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:08.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:08.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:08.083][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2021-12-11 09:32:08.084][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.TRACE[2021-12-11 09:32:08.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:08.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:08.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:08.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:08.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:08.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:08.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:08.116][private$loadEntries] Creating entries from ids [1]: "10561".
biodb.DEBUG[2021-12-11 09:32:08.117][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2021-12-11 09:32:08.118][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/test.db.copy.comp.csv.file.db".
biodb.DEBUG[2021-12-11 09:32:08.119][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-11 09:32:08.120][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-11 09:32:08.120][private$doGetEntryContentFromDb] Entry id: 10561
biodb.DEBUG[2021-12-11 09:32:08.122][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2021-12-11 09:32:08.131][self$createEntryFromContent] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2021-12-11 09:32:08.132][self$createEntryFromContent] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2021-12-11 09:32:08.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:08.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:08.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:08.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:08.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:08.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:08.165][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2021-12-11 09:32:08.166][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.TRACE[2021-12-11 09:32:08.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:08.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:08.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:08.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:08.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:08.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:08.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:08.196][private$loadEntries] Creating entries from ids [1]: "16750".
biodb.DEBUG[2021-12-11 09:32:08.196][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2021-12-11 09:32:08.197][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/test.db.copy.comp.csv.file.db".
biodb.DEBUG[2021-12-11 09:32:08.198][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-11 09:32:08.199][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-11 09:32:08.200][private$doGetEntryContentFromDb] Entry id: 16750
biodb.DEBUG[2021-12-11 09:32:08.201][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2021-12-11 09:32:08.209][self$createEntryFromContent] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2021-12-11 09:32:08.210][self$createEntryFromContent] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2021-12-11 09:32:08.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:08.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:08.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:08.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:08.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:08.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:08.239][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2021-12-11 09:32:08.240][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.TRACE[2021-12-11 09:32:08.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.csv.file.id.
biodb.TRACE[2021-12-11 09:32:08.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:08.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:08.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:08.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:08.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:08.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2021-12-11 09:32:08.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2021-12-11 09:32:08.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2021-12-11 09:32:08.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2021-12-11 09:32:08.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2021-12-11 09:32:08.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2021-12-11 09:32:08.270][private$loadEntries] Creating entries from ids [1]: "35485".
biodb.DEBUG[2021-12-11 09:32:08.270][conn$getEntryContent] Get Compound CSV File entry content(s) for 1 id(s)...
biodb.DEBUG[2021-12-11 09:32:08.271][conn$getEntryContent] 1 entry content(s) need to be fetched from Compound CSV File database "/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodb.Rcheck/tests/testthat/output/test.db.copy.comp.csv.file.db".
biodb.DEBUG[2021-12-11 09:32:08.272][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2021-12-11 09:32:08.273][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2021-12-11 09:32:08.274][private$doGetEntryContentFromDb] Entry id: 35485
biodb.DEBUG[2021-12-11 09:32:08.275][private$doGetEntryContentFromDb] Content of first entry: NA
biodb.DEBUG[2021-12-11 09:32:08.283][self$createEntryFromContent] Creating Compound CSV File entries from 1 content(s).
biodb.DEBUG[2021-12-11 09:32:08.284][self$createEntryFromContent] Parsing 1 Compound CSV File entries.
biodb.DEBUG[2021-12-11 09:32:08.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2021-12-11 09:32:08.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2021-12-11 09:32:08.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2021-12-11 09:32:08.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2021-12-11 09:32:08.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnable