############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/rWikiPathways_1.12.0.tar.gz && rm -rf rWikiPathways.buildbin-libdir && mkdir rWikiPathways.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rWikiPathways.buildbin-libdir rWikiPathways_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL rWikiPathways_1.12.0.zip && rm rWikiPathways_1.12.0.tar.gz rWikiPathways_1.12.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 1 9514k 1 167k 0 0 737k 0 0:00:12 --:--:-- 0:00:12 736k 44 9514k 44 4231k 0 0 3442k 0 0:00:02 0:00:01 0:00:01 3443k 97 9514k 97 9230k 0 0 4139k 0 0:00:02 0:00:02 --:--:-- 4139k 100 9514k 100 9514k 0 0 4151k 0 0:00:02 0:00:02 --:--:-- 4151k install for i386 * installing *source* package 'rWikiPathways' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rWikiPathways' finding HTML links ... done downloadPathwayArchive html findPathwayIdsByLiterature html findPathwayIdsByText html findPathwayIdsByXref html findPathwayNamesByLiterature html findPathwayNamesByText html findPathwayNamesByXref html findPathwayUrlsByLiterature html findPathwayUrlsByText html findPathwayUrlsByXref html findPathwaysByLiterature html findPathwaysByText html findPathwaysByXref html getCurationTagNames html getCurationTags html getEveryCurationTag html getOntologyTermIds html getOntologyTermNames html getOntologyTerms html getPathway html getPathwayHistory html getPathwayIdsByCurationTag html getPathwayIdsByOntologyTerm html getPathwayIdsByParentOntologyTerm html getPathwayInfo html getPathwaysByCurationTag html getPathwaysByOntologyTerm html getPathwaysByParentOntologyTerm html getRecentChanges html getRecentChangesIds html getRecentChangesNames html getXrefList html listOrganisms html listPathwayIds html listPathwayNames html listPathwayUrls html listPathways html readGMT html readGMTnames html readPathwayGMT html wikipathwaysAPI html wikipathwaysGET html writeGMT html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'rWikiPathways' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'rWikiPathways' as rWikiPathways_1.12.0.zip * DONE (rWikiPathways) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'rWikiPathways' successfully unpacked and MD5 sums checked