############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/gCrisprTools_1.20.0.tar.gz && rm -rf gCrisprTools.buildbin-libdir && mkdir gCrisprTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gCrisprTools.buildbin-libdir gCrisprTools_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL gCrisprTools_1.20.0.zip && rm gCrisprTools_1.20.0.tar.gz gCrisprTools_1.20.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 3 8836k 3 325k 0 0 575k 0 0:00:15 --:--:-- 0:00:15 575k 17 8836k 17 1567k 0 0 1000k 0 0:00:08 0:00:01 0:00:07 1000k 40 8836k 40 3553k 0 0 1384k 0 0:00:06 0:00:02 0:00:04 1384k 74 8836k 74 6603k 0 0 1854k 0 0:00:04 0:00:03 0:00:01 1854k 100 8836k 100 8836k 0 0 2131k 0 0:00:04 0:00:04 --:--:-- 2131k install for i386 * installing *source* package 'gCrisprTools' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gCrisprTools' finding HTML links ... done aln html ann html appendDateAndExt html ct.CAT html ct.DirectionalTests html ct.GCbias html ct.GREATdb html ct.PRC html ct.PantherPathwayEnrichment html ct.ROC html ct.RRAaPvals html ct.RRAalpha html ct.RRAalphaBatch html ct.alignmentChart html ct.alphaBeta html ct.applyAlpha html ct.buildSE html ct.drawColorLegend html ct.drawFlat html ct.ecdf html ct.exprsColor html ct.filterReads html ct.gRNARankByReplicate html ct.generateResults html ct.getPanther html ct.guideCDF html ct.inputCheck html ct.makeContrastReport html ct.makeQCReport html ct.makeReport html ct.makeRhoNull html ct.multiGSEA html ct.normalizeBySlope html ct.normalizeFQ html ct.normalizeFactoredQuantiles html ct.normalizeGuides html ct.normalizeMedians html ct.normalizeNTC html ct.normalizeSpline html ct.numcores html ct.prepareAnnotation html ct.preprocessFit html ct.rawCountDensities html ct.resultCheck html ct.signalSummary html ct.stackGuides html ct.targetSetEnrichment html ct.topTargets html ct.viewControls html ct.viewGuides html dir.writable html es html essential.genes html fit html gCrisprTools-package html initOutDir html renderReport html resultsDF html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'gCrisprTools' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'gCrisprTools' as gCrisprTools_1.20.0.zip * DONE (gCrisprTools) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'gCrisprTools' successfully unpacked and MD5 sums checked