############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/brendaDb_1.6.0.tar.gz && rm -rf brendaDb.buildbin-libdir && mkdir brendaDb.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=brendaDb.buildbin-libdir brendaDb_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL brendaDb_1.6.0.zip && rm brendaDb_1.6.0.tar.gz brendaDb_1.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 363k 100 363k 0 0 1193k 0 --:--:-- --:--:-- --:--:-- 1199k install for i386 * installing *source* package 'brendaDb' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c read_brenda.cpp -o read_brenda.o C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o brendaDb.dll tmp.def RcppExports.o read_brenda.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/brendaDb.buildbin-libdir/00LOCK-brendaDb/00new/brendaDb/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'brendaDb' finding HTML links ... done BiocycPathwayEnzymes html BiocycPathwayGenes html CleanECNumber html ConfigBPCores html DownloadBrenda html ExtractField html ID2Enzyme html InitBrendaDeprecatedEntry html InitBrendaEntry html ParseGeneric html ParseNoDescription html ParseProtein html ParseProteinNum html ParseReaction html ParseRecommendedName html ParseReference html ParseSystematicName html PrettyPrintBrendaEntry html PrintTreeHelper html QueryBrenda html QueryBrendaBase html ReadBrenda html ReadBrendaFile html SelectOrganism html SeparateEntries html SeparateSubentries html ShowFields html acronyms html brendaDb-package html print.brenda.entries html print.brenda.entry html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'brendaDb' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c read_brenda.cpp -o read_brenda.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o brendaDb.dll tmp.def RcppExports.o read_brenda.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/brendaDb.buildbin-libdir/brendaDb/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'brendaDb' as brendaDb_1.6.0.zip * DONE (brendaDb) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'brendaDb' successfully unpacked and MD5 sums checked