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### Running command:
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###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:TimiRGeN.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings TimiRGeN_1.2.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/TimiRGeN.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TimiRGeN/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TimiRGeN' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TimiRGeN' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... NOTE
  Note: found 1 marked Latin-1 string
  Note: found 2 marked UTF-8 strings
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
clusterList    15.22   0.21   17.01
makeDynamic    12.79   0.12   14.65
diffExpressRes 12.56   0.19   14.57
eNames         12.08   0.18   13.89
addIds         11.41   0.25   13.28
quickHClust    11.46   0.13   13.17
linearRegr     11.40   0.08   13.18
getIdsMrna     11.33   0.05   13.02
wikiMrna       11.04   0.17   13.81
quickPathwayTC 10.98   0.14   12.92
quickTCPred    10.67   0.07   12.51
quickReg       10.67   0.03   12.64
quickDendro    10.57   0.11   12.28
quickDMap      10.55   0.06   12.39
multiReg       10.37   0.10   11.91
quickCrossCorr 10.25   0.09   12.02
quickTC        10.27   0.05   11.96
makeMapp        9.97   0.10   11.49
dloadGmt        3.25   0.82    5.39
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
clusterList    10.03   0.11   11.94
wikiMrna        8.98   0.14   11.83
diffExpressRes  8.70   0.11   10.50
quickTCPred     8.71   0.09   10.11
eNames          8.67   0.00   10.50
quickDMap       8.50   0.17   10.02
quickHClust     8.60   0.06   10.34
quickDendro     8.38   0.10    9.77
quickReg        8.37   0.08    9.77
addIds          8.22   0.21   10.17
quickCrossCorr  8.31   0.08   10.12
quickPathwayTC  8.14   0.14   10.13
linearRegr      8.17   0.11    9.79
multiReg        8.12   0.07    9.49
makeDynamic     8.02   0.03    9.52
quickTC         7.96   0.06   10.34
makeMapp        7.37   0.16    8.96
getIdsMrna      6.51   0.10    8.33
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.13-bioc/meat/TimiRGeN.Rcheck/00check.log'
for details.