############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SeqGSEA_1.32.0.tar.gz && rm -rf SeqGSEA.buildbin-libdir && mkdir SeqGSEA.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SeqGSEA.buildbin-libdir SeqGSEA_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SeqGSEA_1.32.0.zip && rm SeqGSEA_1.32.0.tar.gz SeqGSEA_1.32.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 881k 100 881k 0 0 2121k 0 --:--:-- --:--:-- --:--:-- 2125k install for i386 * installing *source* package 'SeqGSEA' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SeqGSEA' finding HTML links ... done DENBStat4GSEA html DENBStatPermut4GSEA html DENBTest html DEpermutePval html DEscore html DSpermute4GSEA html DSpermutePval html DSresultExonTable html DSresultGeneTable html GSEAresultTable html GSEnrichAnalyze html GS_example html RCS_example html ReadCountSet-class html finding level-2 HTML links ... done SeqGSEA-package html SeqGeneSet-class html calES html calES.perm html convertEnsembl2Symbol html convertSymbol2Ensembl html counts-methods html estiExonNBstat html estiGeneNBstat html exonID html exonTestability html geneID html geneList html genePermuteScore html geneScore html geneSetDescs html geneSetNames html geneSetSize html geneTestability html genpermuteMat html getGeneCount html label html loadExonCountData html loadGenesets html newGeneSets html newReadCountSet html normES html normFactor html plotES html plotGeneScore html plotSig html plotSigGeneSet html rankCombine html runDESeq html runSeqGSEA html scoreNormalization html signifES html size html subsetByGenes html topDEGenes html topDSExons html topDSGenes html topGeneSets html writeScores html writeSigGeneSet html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'SeqGSEA' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'SeqGSEA' as SeqGSEA_1.32.0.zip * DONE (SeqGSEA) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'SeqGSEA' successfully unpacked and MD5 sums checked