############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GenVisR_1.24.0.tar.gz && rm -rf GenVisR.buildbin-libdir && mkdir GenVisR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenVisR.buildbin-libdir GenVisR_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GenVisR_1.24.0.zip && rm GenVisR_1.24.0.tar.gz GenVisR_1.24.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 34 2098k 34 718k 0 0 1912k 0 0:00:01 --:--:-- 0:00:01 1910k 100 2098k 100 2098k 0 0 3093k 0 --:--:-- --:--:-- --:--:-- 3095k install for i386 * installing *source* package 'GenVisR' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GenVisR' finding HTML links ... done Clinical-class html GMS-class html GMS_Virtual-class html GMS_v4-class html GenVisR html HCC1395_Germline html HCC1395_N html HCC1395_T html Lolliplot-class html LucCNseg html MutSpectra-class html MutationAnnotationFormat-class html MutationAnnotationFormat_Virtual-class html MutationAnnotationFormat_v1.0-class html MutationAnnotationFormat_v2.0-class html MutationAnnotationFormat_v2.1-class html MutationAnnotationFormat_v2.2-class html MutationAnnotationFormat_v2.3-class html MutationAnnotationFormat_v2.4-class html PIK3CA html Rainfall-class html SNPloci html TvTi html VEP-class html VEP_Virtual-class html VEP_v88-class html Waterfall-class html brcaMAF html cnFreq html cnSpec html cnView html compIdent html covBars html cytoGeno html drawPlot-methods html genCov html geneViz html getData-methods html getDescription-methods html getGrob-methods html getHeader-methods html getMeta-methods html getMutation-methods html getPath-methods html getPosition-methods html getSample-methods html getVersion-methods html hg19chr html ideoView html lohSpec html lohView html lolliplot html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/GenVisR.buildbin-libdir/00LOCK-GenVisR/00new/GenVisR/help/lolliplot.html lolliplot_AA2sidechain html lolliplot_buildMain html waterfall html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/GenVisR.buildbin-libdir/00LOCK-GenVisR/00new/GenVisR/help/waterfall.html writeData-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GenVisR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'GenVisR' as GenVisR_1.24.0.zip * DONE (GenVisR) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'GenVisR' successfully unpacked and MD5 sums checked