############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CopyNumberPlots_1.8.0.tar.gz && rm -rf CopyNumberPlots.buildbin-libdir && mkdir CopyNumberPlots.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CopyNumberPlots.buildbin-libdir CopyNumberPlots_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CopyNumberPlots_1.8.0.zip && rm CopyNumberPlots_1.8.0.tar.gz CopyNumberPlots_1.8.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 184k 100 184k 0 0 810k 0 --:--:-- --:--:-- --:--:-- 814k install for i386 * installing *source* package 'CopyNumberPlots' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CopyNumberPlots' finding HTML links ... done EnsemblStyle html UCSCStyle html Ztree2Hclust html colByCopyNumber html computeHclustPlotOrder html getBAFColumn html getChrColumn html getColumn html getCopyNumberColors html getCopyNumberColumn html getEndColumn html getIDColumn html getLOHColumn html getLRRColumn html getPosColumn html getSegmentValueColumn html getStartColumn html loadCopyNumberCalls html loadCopyNumberCallsCNVkit html loadCopyNumberCallsCnmops html loadCopyNumberCallsDECoN html loadCopyNumberCallsDNAcopy html loadCopyNumberCallsPanelcnmops html loadCopyNumberCallsSeg html loadCopyNumberCallspennCNV html loadSNPData html loadSNPDataDNAcopy html loadSNPDataFromVCF html plotBAF html finding level-2 HTML links ... done plotCopyNumberCalls html plotCopyNumberCallsAsLines html plotCopyNumberSummary html plotLRR html plotSingleCellCopyNumberCalls html plotSingleCellCopyNumberSummary html prepareLabels html readHDF5Ztree html removeNAs html transformChr html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CopyNumberPlots' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'CopyNumberPlots' as CopyNumberPlots_1.8.0.zip * DONE (CopyNumberPlots) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'CopyNumberPlots' successfully unpacked and MD5 sums checked