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This page was generated on 2021-10-15 15:05:35 -0400 (Fri, 15 Oct 2021).

BUILD results for AnnotationFuncs on nebbiolo1

To the developers/maintainers of the AnnotationFuncs package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AnnotationFuncs.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 65/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AnnotationFuncs 1.42.0  (landing page)
Stefan McKinnon Edwards
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/AnnotationFuncs
git_branch: RELEASE_3_13
git_last_commit: e88a01e
git_last_commit_date: 2021-05-19 11:47:52 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: AnnotationFuncs
Version: 1.42.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationFuncs
StartedAt: 2021-10-14 06:41:55 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 06:42:10 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 14.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationFuncs
###
##############################################################################
##############################################################################


* checking for file ‘AnnotationFuncs/DESCRIPTION’ ... OK
* preparing ‘AnnotationFuncs’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘AnnotationFuncsUserguide.Rnw’ using Sweave
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: ‘S4Vectors’

The following objects are masked from ‘package:base’:

    I, expand.grid, unname


Warning: Package 'AnnotationFuncs' is deprecated and will be removed from
  Bioconductor version 3.14

Warning in translate(symbols, from = org.Bt.egSYMBOL2EG, to = org.Hs.egGENENAME) :
  TAXID for 'to' and 'from' does not match! We found:
	 From:	Bos taurus
	To:	Homo sapiens
	For cross species (ie. homologes) look at e.g. hom.Hs.inp.db.

Error: processing vignette 'AnnotationFuncsUserguide.Rnw' failed with diagnostics:
 chunk 14 
Error in library(hom.Hs.inp.db) : 
  there is no package called ‘hom.Hs.inp.db’

--- failed re-building ‘AnnotationFuncsUserguide.Rnw’

SUMMARY: processing the following file failed:
  ‘AnnotationFuncsUserguide.Rnw’

Error: Vignette re-building failed.
Execution halted