Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:35 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the AlphaBeta package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AlphaBeta.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 45/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
AlphaBeta 1.6.1 (landing page) Yadollah Shahryary Dizaji
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: AlphaBeta |
Version: 1.6.1 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:AlphaBeta.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings AlphaBeta_1.6.1.tar.gz |
StartedAt: 2021-10-14 08:50:28 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 08:56:30 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 361.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: AlphaBeta.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:AlphaBeta.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings AlphaBeta_1.6.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/AlphaBeta.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘AlphaBeta/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘AlphaBeta’ version ‘1.6.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘AlphaBeta’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE File LICENSE is not mentioned in the DESCRIPTION file. * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE ABplot: no visible binding for global variable ‘delta.t’ ABplot: no visible binding for global variable ‘div.obs’ BOOTmodel : LSE_intercept: no visible binding for global variable ‘sel’ BOOTmodel: no visible binding for global variable ‘sel’ BOOTmodel: multiple local function definitions for ‘divergence’ with different formal arguments plotPedigree: no visible binding for global variable ‘meth’ plotPedigree: no visible binding for global variable ‘V1’ plotPedigree: no visible binding for global variable ‘V2’ Undefined global functions or variables: V1 V2 delta.t div.obs meth sel * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed BOOTmodel 82.010 0.004 82.020 ABselectUU 77.961 0.008 77.973 ABselectMM 62.947 0.008 62.956 ABneutral 52.407 0.320 52.739 ABselectUUSOMA 5.576 0.000 5.576 ABneutralSOMA 5.238 0.016 5.254 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.13-bioc/meat/AlphaBeta.Rcheck/00check.log’ for details.
AlphaBeta.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL AlphaBeta ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘AlphaBeta’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AlphaBeta)
AlphaBeta.Rcheck/AlphaBeta-Ex.timings
name | user | system | elapsed | |
ABneutral | 52.407 | 0.320 | 52.739 | |
ABneutralSOMA | 5.238 | 0.016 | 5.254 | |
ABnull | 0.011 | 0.000 | 0.010 | |
ABplot | 0.202 | 0.016 | 0.218 | |
ABselectMM | 62.947 | 0.008 | 62.956 | |
ABselectMMSOMA | 3.781 | 0.000 | 3.781 | |
ABselectUU | 77.961 | 0.008 | 77.973 | |
ABselectUUSOMA | 5.576 | 0.000 | 5.576 | |
BOOTmodel | 82.010 | 0.004 | 82.020 | |
FtestRSS | 0.007 | 0.003 | 0.010 | |
buildPedigree | 0.796 | 0.027 | 3.939 | |
dMatrix | 0.137 | 0.032 | 0.168 | |
plotPedigree | 0.056 | 0.007 | 0.064 | |
rc.meth.lvl | 0.544 | 0.018 | 4.012 | |