Sara Aibar
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/AUCell |
| git_branch: RELEASE_3_13 |
| git_last_commit: 8849265 |
| git_last_commit_date: 2021-05-19 12:30:20 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:05:58 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the AUCell package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AUCell.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 101/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| AUCell 1.14.0 (landing page) Sara Aibar
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: AUCell |
| Version: 1.14.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:AUCell.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings AUCell_1.14.0.tar.gz |
| StartedAt: 2021-10-14 19:43:00 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 19:48:21 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 321.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: AUCell.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:AUCell.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings AUCell_1.14.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/AUCell.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AUCell/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'AUCell' version '1.14.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: 'doMC'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'AUCell' can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.2Mb
sub-directories of 1Mb or more:
doc 4.3Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'S4Vectors'
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
AUCell_createViewerApp : <anonymous>: no visible global function
definition for '%>%'
AUCell_createViewerApp : <anonymous>: no visible binding for global
variable 'tsne1'
AUCell_createViewerApp : <anonymous>: no visible binding for global
variable 'tsne2'
AUCell_createViewerApp : <anonymous>: no visible binding for global
variable 'cell'
plotEmb_rgb : <anonymous>: no visible global function definition for
'rgb'
Undefined global functions or variables:
%>% cell rgb tsne1 tsne2
Consider adding
importFrom("grDevices", "rgb")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
AUCell_createViewerApp 3.96 1.14 5.62
AUCell_exploreThresholds 3.28 0.10 22.46
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs
See
'C:/Users/biocbuild/bbs-3.13-bioc/meat/AUCell.Rcheck/00check.log'
for details.
AUCell.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/AUCell_1.14.0.tar.gz && rm -rf AUCell.buildbin-libdir && mkdir AUCell.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AUCell.buildbin-libdir AUCell_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL AUCell_1.14.0.zip && rm AUCell_1.14.0.tar.gz AUCell_1.14.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
43 2997k 43 1309k 0 0 1909k 0 0:00:01 --:--:-- 0:00:01 1908k
100 2997k 100 2997k 0 0 2483k 0 0:00:01 0:00:01 --:--:-- 2485k
install for i386
* installing *source* package 'AUCell' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'AUCell'
finding HTML links ... done
AUCell_buildRankings html
finding level-2 HTML links ... done
AUCell_calcAUC html
AUCell_createViewerApp html
AUCell_exploreThresholds html
AUCell_plotHist html
AUCell_plotTSNE html
GeneSet-methods html
aucellResults-class html
getSetNames html
orderAUC html
plotEmb_rgb html
plotGeneCount html
plotTsne_cellProps html
updateAucellResults html
** building package indices
** installing vignettes
'AUCell.Rmd' using 'UTF-8'
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'AUCell' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AUCell' as AUCell_1.14.0.zip
* DONE (AUCell)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'AUCell' successfully unpacked and MD5 sums checked
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AUCell.Rcheck/tests_i386/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(AUCell)
>
> test_check("AUCell")
min 1% 5% 10% 50% 100%
3 5 6 7 10 16
min 1% 5% 10% 50% 100%
3 5 6 7 10 16
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 42 ]
>
> proc.time()
user system elapsed
17.53 2.06 19.59
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AUCell.Rcheck/tests_x64/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(AUCell)
>
> test_check("AUCell")
min 1% 5% 10% 50% 100%
3 5 6 7 10 16
min 1% 5% 10% 50% 100%
3 5 6 7 10 16
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 42 ]
>
> proc.time()
user system elapsed
18.92 1.54 20.45
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AUCell.Rcheck/examples_i386/AUCell-Ex.timings
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AUCell.Rcheck/examples_x64/AUCell-Ex.timings
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