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CHECK report for tissueTreg on malbec1

This page was generated on 2021-05-06 14:10:15 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the tissueTreg package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 379/398HostnameOS / ArchINSTALLBUILDCHECK
tissueTreg 1.10.0  (landing page)
Charles Imbusch
Snapshot Date: 2021-05-06 09:00:13 -0400 (Thu, 06 May 2021)
URL: https://git.bioconductor.org/packages/tissueTreg
Branch: RELEASE_3_12
Last Commit: d504da1
Last Changed Date: 2020-10-27 10:26:30 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: tissueTreg
Version: 1.10.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:tissueTreg.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings tissueTreg_1.10.0.tar.gz
StartedAt: 2021-05-06 12:53:51 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 12:54:37 -0400 (Thu, 06 May 2021)
EllapsedTime: 45.4 seconds
RetCode: 0
Status:   OK  
CheckDir: tissueTreg.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:tissueTreg.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings tissueTreg_1.10.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.12-data-experiment/meat/tissueTreg.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘tissueTreg/DESCRIPTION’ ... OK
* this is package ‘tissueTreg’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tissueTreg’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
tissueTreg 11.38  0.364  12.527
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

tissueTreg.Rcheck/00install.out

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### Running command:
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###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL tissueTreg
###
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* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘tissueTreg’ ...
** using staged installation
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tissueTreg)

Tests output

tissueTreg.Rcheck/tests/testthat.Rout


R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(tissueTreg)
> 
> test_check("tissueTreg")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
> 
> proc.time()
   user  system elapsed 
 23.952   0.536  25.877 

Example timings

tissueTreg.Rcheck/tissueTreg-Ex.timings

nameusersystemelapsed
tissueTreg11.380 0.36412.527