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CHECK report for optimalFlowData on malbec1

This page was generated on 2021-05-06 14:10:12 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the optimalFlowData package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 261/398HostnameOS / ArchINSTALLBUILDCHECK
optimalFlowData 1.2.0  (landing page)
Hristo Inouzhe
Snapshot Date: 2021-05-06 09:00:13 -0400 (Thu, 06 May 2021)
URL: https://git.bioconductor.org/packages/optimalFlowData
Branch: RELEASE_3_12
Last Commit: 930e8b9
Last Changed Date: 2020-10-27 10:31:47 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: optimalFlowData
Version: 1.2.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings optimalFlowData_1.2.0.tar.gz
StartedAt: 2021-05-06 12:29:30 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 12:30:22 -0400 (Thu, 06 May 2021)
EllapsedTime: 51.7 seconds
RetCode: 0
Status:   OK  
CheckDir: optimalFlowData.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings optimalFlowData_1.2.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.12-data-experiment/meat/optimalFlowData.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘optimalFlowData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘optimalFlowData’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘optimalFlowData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 101.0Mb
  sub-directories of 1Mb or more:
    data  100.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.12-data-experiment/meat/optimalFlowData.Rcheck/00check.log’
for details.



Installation output

optimalFlowData.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL optimalFlowData
###
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* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘optimalFlowData’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (optimalFlowData)

Tests output


Example timings

optimalFlowData.Rcheck/optimalFlowData-Ex.timings

nameusersystemelapsed
Cytometry10.0520.0000.056
Cytometry100.0440.0000.045
Cytometry110.0240.0160.039
Cytometry120.0360.0040.041
Cytometry130.0320.0160.045
Cytometry140.0480.0120.062
Cytometry150.0240.0000.023
Cytometry160.0240.0000.023
Cytometry170.0920.0040.097
Cytometry180.0560.0200.079
Cytometry190.0320.0040.038
Cytometry20.0640.0080.073
Cytometry200.0600.0080.067
Cytometry210.0760.0000.078
Cytometry220.0360.0000.034
Cytometry230.0280.0000.031
Cytometry240.0280.0040.033
Cytometry250.0320.0000.031
Cytometry260.0320.0000.035
Cytometry270.1040.0080.114
Cytometry280.0880.0240.112
Cytometry290.1000.0000.097
Cytometry30.0160.0000.020
Cytometry300.0760.0000.076
Cytometry310.0760.0000.075
Cytometry320.0880.0000.088
Cytometry330.0440.0000.046
Cytometry340.1320.0040.137
Cytometry350.0680.0000.068
Cytometry360.020.000.02
Cytometry370.0200.0000.017
Cytometry380.0160.0000.018
Cytometry390.0160.0040.018
Cytometry40.020.000.02
Cytometry400.0440.0040.046
Cytometry50.0200.0000.021
Cytometry60.0160.0000.019
Cytometry70.0160.0000.018
Cytometry80.0160.0040.020
Cytometry90.0360.0000.033
buildDatabase0.6400.0240.665
cytometry.diagnosis0.0000.0000.002
noise.types0.0040.0000.001