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CHECK report for geneLenDataBase on malbec1

This page was generated on 2021-05-06 14:10:09 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the geneLenDataBase package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 141/398HostnameOS / ArchINSTALLBUILDCHECK
geneLenDataBase 1.26.0  (landing page)
Matthew Young , Nadia Davidson
Snapshot Date: 2021-05-06 09:00:13 -0400 (Thu, 06 May 2021)
URL: https://git.bioconductor.org/packages/geneLenDataBase
Branch: RELEASE_3_12
Last Commit: 2724715
Last Changed Date: 2020-10-27 09:51:48 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version exists in internal repository

Summary

Package: geneLenDataBase
Version: 1.26.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings geneLenDataBase_1.26.0.tar.gz
StartedAt: 2021-05-06 12:05:45 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 12:16:02 -0400 (Thu, 06 May 2021)
EllapsedTime: 617.1 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

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##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings geneLenDataBase_1.26.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.12-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.26.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.12-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.



Installation output

geneLenDataBase.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL geneLenDataBase
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘geneLenDataBase’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geneLenDataBase)

Tests output


Example timings

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.2160.0040.219
anoCar1.genscan.LENGTH0.0720.0240.096
anoCar1.xenoRefGene.LENGTH0.9960.0041.001
anoGam1.ensGene.LENGTH0.0880.0360.125
anoGam1.geneid.LENGTH0.0600.0400.103
anoGam1.genscan.LENGTH0.0680.0200.089
apiMel1.genscan.LENGTH0.7520.0120.764
apiMel2.ensGene.LENGTH0.1320.0160.148
apiMel2.geneid.LENGTH0.0680.0360.104
apiMel2.genscan.LENGTH0.0440.0200.064
aplCal1.xenoRefGene.LENGTH0.4920.0080.503
bosTau2.geneSymbol.LENGTH0.0560.0240.084
bosTau2.geneid.LENGTH0.2560.0040.261
bosTau2.genscan.LENGTH0.1520.0360.191
bosTau2.refGene.LENGTH0.0520.0400.090
bosTau2.sgpGene.LENGTH0.1320.0000.134
bosTau3.ensGene.LENGTH0.1760.0400.214
bosTau3.geneSymbol.LENGTH0.0440.0320.079
bosTau3.geneid.LENGTH0.1360.0080.148
bosTau3.genscan.LENGTH0.0840.0160.099
bosTau3.refGene.LENGTH0.0680.0040.074
bosTau3.sgpGene.LENGTH0.1200.0360.153
bosTau4.ensGene.LENGTH0.1280.0160.143
bosTau4.geneSymbol.LENGTH0.0440.0280.072
bosTau4.genscan.LENGTH0.0840.0000.085
bosTau4.nscanGene.LENGTH0.0400.0240.065
bosTau4.refGene.LENGTH0.0520.0160.071
braFlo1.xenoRefGene.LENGTH0.4720.0120.481
caeJap1.xenoRefGene.LENGTH0.4360.0000.437
caePb1.xenoRefGene.LENGTH0.5960.0000.597
caePb2.xenoRefGene.LENGTH0.4960.0000.496
caeRem2.xenoRefGene.LENGTH0.4600.0000.457
caeRem3.xenoRefGene.LENGTH0.4480.0000.451
calJac1.genscan.LENGTH0.1080.0280.139
calJac1.nscanGene.LENGTH0.1200.0000.119
calJac1.xenoRefGene.LENGTH0.9360.0080.943
canFam1.ensGene.LENGTH0.1400.0000.141
canFam1.geneSymbol.LENGTH0.0120.0000.010
canFam1.genscan.LENGTH0.0760.0040.080
canFam1.nscanGene.LENGTH0.0680.0040.075
canFam1.refGene.LENGTH0.0080.0000.009
canFam1.xenoRefGene.LENGTH0.8640.0040.868
canFam2.ensGene.LENGTH0.1200.0280.149
canFam2.geneSymbol.LENGTH0.0120.0000.009
canFam2.genscan.LENGTH0.0600.0080.068
canFam2.nscanGene.LENGTH0.0680.0080.077
canFam2.refGene.LENGTH0.0080.0000.008
canFam2.xenoRefGene.LENGTH0.7920.0000.795
cavPor3.ensGene.LENGTH0.1200.0120.131
cavPor3.genscan.LENGTH0.2520.0080.259
cavPor3.nscanGene.LENGTH0.0760.0080.082
cavPor3.xenoRefGene.LENGTH0.7320.0000.733
cb1.xenoRefGene.LENGTH0.4680.0000.469
cb3.xenoRefGene.LENGTH0.4000.0000.398
ce2.geneSymbol.LENGTH0.1120.0400.150
ce2.geneid.LENGTH0.0560.0000.058
ce2.refGene.LENGTH0.1040.0400.142
ce4.geneSymbol.LENGTH0.0960.0480.145
ce4.refGene.LENGTH0.0920.0400.133
ce4.xenoRefGene.LENGTH0.0840.0000.085
ce6.ensGene.LENGTH0.1040.0160.118
ce6.geneSymbol.LENGTH0.1120.0360.149
ce6.refGene.LENGTH0.0880.0560.145
ce6.xenoRefGene.LENGTH0.0840.0000.086
ci1.geneSymbol.LENGTH0.0080.0000.008
ci1.refGene.LENGTH0.0040.0040.008
ci1.xenoRefGene.LENGTH0.1840.0000.184
ci2.ensGene.LENGTH0.0680.0040.073
ci2.geneSymbol.LENGTH0.0040.0040.008
ci2.refGene.LENGTH0.0040.0040.008
ci2.xenoRefGene.LENGTH0.3560.0000.358
danRer3.ensGene.LENGTH0.1440.0440.188
danRer3.geneSymbol.LENGTH0.0920.0200.109
danRer3.refGene.LENGTH0.0600.0520.111
danRer4.ensGene.LENGTH0.1480.0000.149
danRer4.geneSymbol.LENGTH0.0880.0320.117
danRer4.genscan.LENGTH0.0640.0080.073
danRer4.nscanGene.LENGTH0.1200.0080.128
danRer4.refGene.LENGTH0.0480.0600.107
danRer5.ensGene.LENGTH0.1320.0000.134
danRer5.geneSymbol.LENGTH0.0720.0240.097
danRer5.refGene.LENGTH0.0680.0280.095
danRer5.vegaGene.LENGTH0.0640.0240.091
danRer5.vegaPseudoGene.LENGTH0.0040.0000.003
danRer6.ensGene.LENGTH0.1480.0320.179
danRer6.geneSymbol.LENGTH0.0880.0240.112
danRer6.refGene.LENGTH0.0640.0480.109
danRer6.xenoRefGene.LENGTH0.6600.0040.664
dm1.geneSymbol.LENGTH0.1000.0400.141
dm1.genscan.LENGTH0.0360.0160.050
dm1.refGene.LENGTH0.0880.0360.125
dm2.geneSymbol.LENGTH0.1160.0240.139
dm2.geneid.LENGTH0.0440.0400.082
dm2.genscan.LENGTH0.0320.0160.050
dm2.nscanGene.LENGTH0.0520.0000.051
dm2.refGene.LENGTH0.0760.0560.130
dm3.geneSymbol.LENGTH0.0720.0000.074
dm3.nscanPasaGene.LENGTH0.0760.0360.112
dm3.refGene.LENGTH0.0680.0040.070
dp2.genscan.LENGTH0.0520.0080.059
dp2.xenoRefGene.LENGTH0.4200.0000.419
dp3.geneid.LENGTH0.0520.0360.088
dp3.genscan.LENGTH0.0360.0200.055
dp3.xenoRefGene.LENGTH0.1880.0080.195
droAna1.geneid.LENGTH0.0640.0120.077
droAna1.genscan.LENGTH0.0240.0000.023
droAna1.xenoRefGene.LENGTH0.2560.0080.264
droAna2.genscan.LENGTH0.0480.0000.050
droAna2.xenoRefGene.LENGTH0.3680.0080.373
droEre1.genscan.LENGTH0.0560.0040.059
droEre1.xenoRefGene.LENGTH0.3720.0040.375
droGri1.genscan.LENGTH0.0440.0320.079
droGri1.xenoRefGene.LENGTH0.3840.0000.384
droMoj1.geneid.LENGTH0.1440.0240.166
droMoj1.genscan.LENGTH0.0520.0080.059
droMoj1.xenoRefGene.LENGTH0.3000.0160.317
droMoj2.genscan.LENGTH0.0480.0240.074
droMoj2.xenoRefGene.LENGTH0.3960.0080.404
droPer1.genscan.LENGTH0.0480.0360.084
droPer1.xenoRefGene.LENGTH0.3600.0080.366
droSec1.genscan.LENGTH0.0400.0200.062
droSec1.xenoRefGene.LENGTH0.3200.0000.319
droSim1.geneid.LENGTH0.0680.0200.088
droSim1.genscan.LENGTH0.0360.0160.051
droSim1.xenoRefGene.LENGTH0.2600.0000.259
droVir1.geneid.LENGTH0.1120.0120.123
droVir1.genscan.LENGTH0.0600.0240.083
droVir1.xenoRefGene.LENGTH0.2680.0000.269
droVir2.genscan.LENGTH0.0440.0240.069
droVir2.xenoRefGene.LENGTH0.4920.0080.500
droYak1.geneid.LENGTH0.0600.0440.105
droYak1.genscan.LENGTH0.0440.0200.063
droYak1.xenoRefGene.LENGTH0.240.000.24
droYak2.genscan.LENGTH0.0360.0240.060
droYak2.xenoRefGene.LENGTH0.2800.0040.281
equCab1.geneSymbol.LENGTH0.0040.0040.008
equCab1.geneid.LENGTH0.0960.0240.119
equCab1.nscanGene.LENGTH0.0520.0320.087
equCab1.refGene.LENGTH0.0040.0040.007
equCab1.sgpGene.LENGTH0.0760.0080.086
equCab2.ensGene.LENGTH0.1160.0240.137
equCab2.geneSymbol.LENGTH0.0120.0000.012
equCab2.nscanGene.LENGTH0.0720.0360.108
equCab2.refGene.LENGTH0.0040.0080.012
equCab2.xenoRefGene.LENGTH1.4320.0001.436
felCat3.ensGene.LENGTH0.1200.0000.124
felCat3.geneSymbol.LENGTH0.0040.0000.006
felCat3.geneid.LENGTH0.5080.0000.509
felCat3.genscan.LENGTH0.1160.0240.142
felCat3.nscanGene.LENGTH0.1120.0240.133
felCat3.refGene.LENGTH0.0000.0040.006
felCat3.sgpGene.LENGTH0.1560.0000.154
felCat3.xenoRefGene.LENGTH1.3600.0081.369
fr1.ensGene.LENGTH0.1000.0080.109
fr1.genscan.LENGTH0.0640.0000.064
fr2.ensGene.LENGTH0.1600.0280.185
galGal2.ensGene.LENGTH0.0560.0080.063
galGal2.geneSymbol.LENGTH0.0280.0080.036
galGal2.geneid.LENGTH0.0440.0360.081
galGal2.genscan.LENGTH0.0880.0200.105
galGal2.refGene.LENGTH0.0200.0080.031
galGal2.sgpGene.LENGTH0.0760.0280.102
galGal3.ensGene.LENGTH0.0840.0120.094
galGal3.geneSymbol.LENGTH0.0320.0000.033
galGal3.genscan.LENGTH0.0680.0320.101
galGal3.nscanGene.LENGTH0.0760.0000.075
galGal3.refGene.LENGTH0.0320.0000.031
galGal3.xenoRefGene.LENGTH0.5840.0080.592
gasAcu1.ensGene.LENGTH0.1320.0280.159
gasAcu1.nscanGene.LENGTH0.1200.0280.148
hg16.acembly.LENGTH0.5840.0040.587
hg16.ensGene.LENGTH0.0920.0080.098
hg16.exoniphy.LENGTH0.2640.0040.269
hg16.geneSymbol.LENGTH0.1280.0080.136
hg16.geneid.LENGTH0.0800.0280.108
hg16.genscan.LENGTH0.0760.0080.082
hg16.knownGene.LENGTH0.1600.0200.178
hg16.refGene.LENGTH0.1040.0200.125
hg16.sgpGene.LENGTH0.0640.0040.068
hg17.acembly.LENGTH0.8840.0160.900
hg17.acescan.LENGTH0.0160.0000.017
hg17.ccdsGene.LENGTH0.0280.0160.045
hg17.ensGene.LENGTH0.1520.0200.170
hg17.exoniphy.LENGTH1.4640.0081.471
hg17.geneSymbol.LENGTH0.1120.0040.117
hg17.geneid.LENGTH0.0840.0120.094
hg17.genscan.LENGTH0.0600.0160.074
hg17.knownGene.LENGTH0.1400.0080.148
hg17.refGene.LENGTH0.1040.0080.113
hg17.sgpGene.LENGTH0.0800.0240.101
hg17.vegaGene.LENGTH0.0480.0280.078
hg17.vegaPseudoGene.LENGTH0.0280.0000.031
hg17.xenoRefGene.LENGTH0.2640.0000.266
hg18.acembly.LENGTH0.5480.0000.547
hg18.acescan.LENGTH0.0120.0040.018
hg18.ccdsGene.LENGTH0.0520.0120.067
hg18.ensGene.LENGTH0.2520.0040.257
hg18.exoniphy.LENGTH0.4520.0000.454
hg18.geneSymbol.LENGTH0.1160.0160.130
hg18.geneid.LENGTH0.0920.0120.103
hg18.genscan.LENGTH0.0600.0120.074
hg18.knownGene.LENGTH0.1640.0160.177
hg18.knownGeneOld3.LENGTH0.0840.0200.103
hg18.refGene.LENGTH0.1240.0120.137
hg18.sgpGene.LENGTH0.0920.0120.105
hg18.sibGene.LENGTH0.3680.0040.369
hg18.xenoRefGene.LENGTH0.3760.0200.397
hg19.ccdsGene.LENGTH0.0520.0240.076
hg19.ensGene.LENGTH0.3720.0080.379
hg19.exoniphy.LENGTH0.4880.0000.486
hg19.geneSymbol.LENGTH0.1320.0120.145
hg19.knownGene.LENGTH0.1880.0520.240
hg19.nscanGene.LENGTH0.1760.0000.172
hg19.refGene.LENGTH0.1240.0080.133
hg19.xenoRefGene.LENGTH0.4400.0000.439
loxAfr3.xenoRefGene.LENGTH0.9120.0040.917
mm7.ensGene.LENGTH0.1400.0040.143
mm7.geneSymbol.LENGTH0.1000.0000.097
mm7.geneid.LENGTH0.0960.0200.117
mm7.genscan.LENGTH0.0760.0040.081
mm7.knownGene.LENGTH0.1320.0000.133
mm7.refGene.LENGTH0.0920.0000.090
mm7.sgpGene.LENGTH0.3960.0240.422
mm7.xenoRefGene.LENGTH0.40.00.4
mm8.ccdsGene.LENGTH0.0400.0040.045
mm8.ensGene.LENGTH0.1000.0120.115
mm8.geneSymbol.LENGTH0.10.00.1
mm8.geneid.LENGTH0.1040.0120.115
mm8.genscan.LENGTH0.0640.0000.067
mm8.knownGene.LENGTH0.1000.0080.110
mm8.nscanGene.LENGTH0.0680.0000.067
mm8.refGene.LENGTH0.0840.0000.084
mm8.sgpGene.LENGTH0.1080.0040.112
mm8.sibGene.LENGTH0.3000.0000.299
mm8.xenoRefGene.LENGTH0.4360.0280.465
mm9.acembly.LENGTH0.3840.0000.388
mm9.ccdsGene.LENGTH0.0320.0240.059
mm9.ensGene.LENGTH0.2080.0240.230
mm9.exoniphy.LENGTH0.4760.0000.474
mm9.geneSymbol.LENGTH0.1000.0000.101
mm9.geneid.LENGTH0.1040.0240.128
mm9.genscan.LENGTH0.0800.0000.078
mm9.knownGene.LENGTH0.1560.0240.180
mm9.nscanGene.LENGTH0.0640.0040.068
mm9.refGene.LENGTH0.0960.0000.094
mm9.sgpGene.LENGTH0.1000.0240.125
mm9.xenoRefGene.LENGTH0.4760.0200.500
monDom1.genscan.LENGTH0.0760.0120.088
monDom4.ensGene.LENGTH0.1080.0080.116
monDom4.geneSymbol.LENGTH0.0040.0000.005
monDom4.genscan.LENGTH0.0880.0320.120
monDom4.nscanGene.LENGTH0.0880.0400.125
monDom4.refGene.LENGTH0.0040.0000.005
monDom4.xenoRefGene.LENGTH0.4720.0000.472
monDom5.ensGene.LENGTH0.1480.0000.147
monDom5.geneSymbol.LENGTH0.0040.0000.005
monDom5.genscan.LENGTH0.0640.0000.061
monDom5.nscanGene.LENGTH0.1280.0000.130
monDom5.refGene.LENGTH0.0080.0000.005
monDom5.xenoRefGene.LENGTH1.0160.0041.021
ornAna1.ensGene.LENGTH0.1360.0200.158
ornAna1.geneSymbol.LENGTH0.0000.0000.003
ornAna1.refGene.LENGTH0.0040.0000.003
ornAna1.xenoRefGene.LENGTH0.6520.0000.655
oryLat2.ensGene.LENGTH0.1120.0080.119
oryLat2.geneSymbol.LENGTH0.0080.0000.006
oryLat2.refGene.LENGTH0.0040.0000.005
oryLat2.xenoRefGene.LENGTH0.6160.0080.626
panTro1.ensGene.LENGTH0.1160.0080.125
panTro1.geneid.LENGTH0.0840.0240.109
panTro1.genscan.LENGTH0.0680.0040.072
panTro1.xenoRefGene.LENGTH0.1640.0040.166
panTro2.ensGene.LENGTH0.1440.0040.151
panTro2.geneSymbol.LENGTH0.1360.0120.148
panTro2.genscan.LENGTH0.0680.0000.071
panTro2.nscanGene.LENGTH0.0720.0000.070
panTro2.refGene.LENGTH0.1160.0200.136
panTro2.xenoRefGene.LENGTH0.6480.0040.651
petMar1.xenoRefGene.LENGTH0.3640.0280.389
ponAbe2.ensGene.LENGTH0.1240.0200.144
ponAbe2.geneSymbol.LENGTH0.0200.0040.024
ponAbe2.genscan.LENGTH0.0680.0040.071
ponAbe2.nscanGene.LENGTH0.0680.0000.069
ponAbe2.refGene.LENGTH0.0160.0040.023
ponAbe2.xenoRefGene.LENGTH1.3520.0001.355
priPac1.xenoRefGene.LENGTH0.4600.0000.459
rheMac2.ensGene.LENGTH0.1600.0040.164
rheMac2.geneSymbol.LENGTH0.0040.0040.008
rheMac2.geneid.LENGTH0.0960.0000.094
rheMac2.nscanGene.LENGTH0.0680.0000.066
rheMac2.refGene.LENGTH0.0080.0000.008
rheMac2.sgpGene.LENGTH0.0800.0200.098
rheMac2.xenoRefGene.LENGTH0.6480.0000.647
rn3.ensGene.LENGTH0.160.020.18
rn3.geneSymbol.LENGTH0.0840.0320.116
rn3.geneid.LENGTH0.0600.0000.058
rn3.genscan.LENGTH0.0760.0040.081
rn3.knownGene.LENGTH0.0240.0280.052
rn3.nscanGene.LENGTH0.0680.0000.069
rn3.refGene.LENGTH0.0760.0360.115
rn3.sgpGene.LENGTH0.0680.0080.074
rn3.xenoRefGene.LENGTH0.6600.0000.663
rn4.ensGene.LENGTH0.1560.0040.161
rn4.geneSymbol.LENGTH0.0800.0280.107
rn4.geneid.LENGTH0.1120.0200.134
rn4.genscan.LENGTH0.0680.0080.076
rn4.knownGene.LENGTH0.0440.0080.050
rn4.nscanGene.LENGTH0.0840.0480.132
rn4.refGene.LENGTH0.0920.0240.114
rn4.sgpGene.LENGTH0.1200.0120.133
rn4.xenoRefGene.LENGTH0.3600.0000.359
sacCer1.ensGene.LENGTH0.0320.0080.038
sacCer2.ensGene.LENGTH0.0360.0040.041
strPur1.geneSymbol.LENGTH0.0040.0040.007
strPur1.genscan.LENGTH0.0720.0000.071
strPur1.refGene.LENGTH0.0000.0080.007
strPur1.xenoRefGene.LENGTH0.4680.0040.472
strPur2.geneSymbol.LENGTH0.0080.0000.006
strPur2.genscan.LENGTH0.1080.0040.112
strPur2.refGene.LENGTH0.0040.0000.007
strPur2.xenoRefGene.LENGTH0.7720.0000.771
supportedGeneIDs0.1160.0043.730
supportedGenomes0.1360.0041.214
taeGut1.ensGene.LENGTH0.0680.0000.068
taeGut1.geneSymbol.LENGTH0.0040.0000.004
taeGut1.genscan.LENGTH0.0400.0280.069
taeGut1.nscanGene.LENGTH0.0400.0200.058
taeGut1.refGene.LENGTH0.0040.0000.003
taeGut1.xenoRefGene.LENGTH0.5600.0000.562
tetNig1.ensGene.LENGTH0.1120.0160.129
tetNig1.geneid.LENGTH0.0840.0040.088
tetNig1.genscan.LENGTH0.0840.0240.110
tetNig1.nscanGene.LENGTH0.0920.0000.092
tetNig2.ensGene.LENGTH0.0800.0120.094
unfactor0.0040.0000.004
xenTro1.genscan.LENGTH0.0880.0000.088
xenTro2.ensGene.LENGTH0.1120.0200.132
xenTro2.geneSymbol.LENGTH0.0440.0160.064
xenTro2.genscan.LENGTH0.0920.0160.112
xenTro2.refGene.LENGTH0.0320.0320.063