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CHECK report for HiCDataHumanIMR90 on malbec1

This page was generated on 2021-05-06 14:10:10 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the HiCDataHumanIMR90 package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 176/398HostnameOS / ArchINSTALLBUILDCHECK
HiCDataHumanIMR90 1.10.0  (landing page)
Nicolas Servant
Snapshot Date: 2021-05-06 09:00:13 -0400 (Thu, 06 May 2021)
URL: https://git.bioconductor.org/packages/HiCDataHumanIMR90
Branch: RELEASE_3_12
Last Commit: c14938a
Last Changed Date: 2020-10-27 10:09:47 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: HiCDataHumanIMR90
Version: 1.10.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:HiCDataHumanIMR90.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings HiCDataHumanIMR90_1.10.0.tar.gz
StartedAt: 2021-05-06 12:11:35 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 12:13:57 -0400 (Thu, 06 May 2021)
EllapsedTime: 142.3 seconds
RetCode: 0
Status:   OK  
CheckDir: HiCDataHumanIMR90.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:HiCDataHumanIMR90.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings HiCDataHumanIMR90_1.10.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.12-data-experiment/meat/HiCDataHumanIMR90.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HiCDataHumanIMR90/DESCRIPTION’ ... OK
* this is package ‘HiCDataHumanIMR90’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HiCDataHumanIMR90’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 71.0Mb
  sub-directories of 1Mb or more:
    data  70.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
dixon2012_IMR90_40 63.032  0.616   63.71
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.12-data-experiment/meat/HiCDataHumanIMR90.Rcheck/00check.log’
for details.



Installation output

HiCDataHumanIMR90.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL HiCDataHumanIMR90
###
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* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘HiCDataHumanIMR90’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HiCDataHumanIMR90)

Tests output


Example timings

HiCDataHumanIMR90.Rcheck/HiCDataHumanIMR90-Ex.timings

nameusersystemelapsed
dixon2012_IMR90_4063.032 0.61663.710