Back to Long Tests report for BioC 3.12

CHECK report for cBioPortalData on merida1

This page was generated on 2021-05-08 14:20:33 -0400 (Sat, 08 May 2021).

To the developers/maintainers of the cBioPortalData package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 3/10HostnameOS / ArchCHECK
cBioPortalData 2.2.11  (landing page)
Marcel Ramos
Snapshot Date: 2021-05-08 09:00:02 -0400 (Sat, 08 May 2021)
URL: https://git.bioconductor.org/packages/cBioPortalData
Branch: RELEASE_3_12
Last Commit: 48d683a
Last Changed Date: 2021-04-21 23:32:13 -0400 (Wed, 21 Apr 2021)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  WARNINGS  
tokay1Windows Server 2012 R2 Standard / x64  WARNINGS  
merida1macOS 10.14.6 Mojave / x86_64  WARNINGS  

Summary

Package: cBioPortalData
Version: 2.2.11
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no cBioPortalData_2.2.11.tar.gz
StartedAt: 2021-05-08 09:31:26 -0400 (Sat, 08 May 2021)
EndedAt: 2021-05-08 09:35:13 -0400 (Sat, 08 May 2021)
EllapsedTime: 227.3 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: cBioPortalData.Rcheck
Warnings: 1

Tests output


'R CMD check' output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no cBioPortalData_2.2.11.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.12-bioc-longtests/meat/cBioPortalData.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘cBioPortalData/DESCRIPTION’ ... OK
* this is package ‘cBioPortalData’ version ‘2.2.11’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cBioPortalData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
 WARNING
directory ‘longtests’ not found
* DONE

Status: 1 WARNING
See
  ‘/Users/biocbuild/bbs-3.12-bioc-longtests/meat/cBioPortalData.Rcheck/00check.log’
for details.



Installation output

cBioPortalData.Rcheck/00install.out

* installing *source* package ‘cBioPortalData’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cBioPortalData)