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INSTALL report for bnbc on riesling1

This page was generated on 2020-10-28 13:28:10 -0400 (Wed, 28 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE bnbc PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 199/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bnbc 1.12.0
Kipper Fletez-Brant
Snapshot Date: 2020-10-27 13:12:07 -0400 (Tue, 27 Oct 2020)
URL: https://git.bioconductor.org/packages/bnbc
Branch: RELEASE_3_12
Last Commit: 191bf12
Last Changed Date: 2020-10-27 11:28:47 -0400 (Tue, 27 Oct 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK YES, new version is higher than in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK YES, new version is higher than in internal repository
riesling1 Windows Server 2019 Standard / x64 [ OK ] OK  OK  OK 
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK YES, new version is higher than in internal repository

Summary

Package: bnbc
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/bnbc_1.12.0.tar.gz && rm -rf bnbc.buildbin-libdir && mkdir bnbc.buildbin-libdir && D:\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bnbc.buildbin-libdir bnbc_1.12.0.tar.gz && D:\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL bnbc_1.12.0.zip && rm bnbc_1.12.0.tar.gz bnbc_1.12.0.zip
StartedAt: 2020-10-27 17:18:46 -0400 (Tue, 27 Oct 2020)
EndedAt: 2020-10-27 17:20:05 -0400 (Tue, 27 Oct 2020)
EllapsedTime: 79.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/bnbc_1.12.0.tar.gz && rm -rf bnbc.buildbin-libdir && mkdir bnbc.buildbin-libdir && D:\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bnbc.buildbin-libdir bnbc_1.12.0.tar.gz && D:\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL bnbc_1.12.0.zip && rm bnbc_1.12.0.tar.gz bnbc_1.12.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2450k  100 2450k    0     0  26.5M      0 --:--:-- --:--:-- --:--:-- 26.8M

install for i386

* installing *source* package 'bnbc' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c update_bands.cpp -o update_bands.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o bnbc.dll tmp.def RcppExports.o update_bands.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.12-bioc/R/bin/i386 -lR
installing to D:/biocbuild/bbs-3.12-bioc/meat/bnbc.buildbin-libdir/00LOCK-bnbc/00new/bnbc/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'bnbc'
    finding HTML links ... done
    ContactGroup-class                      html  
    apply_functions                         html  
    band                                    html  
    bnbc-package                            html  
    bnbc                                    html  
    cgEx                                    html  
    cooler_methods                          html  
    getBandIdx                              html  
    getBandMatrix                           html  
    groupZeros                              html  
    smoothing                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'bnbc' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c update_bands.cpp -o update_bands.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o bnbc.dll tmp.def RcppExports.o update_bands.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.12-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.12-bioc/meat/bnbc.buildbin-libdir/bnbc/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bnbc' as bnbc_1.12.0.zip
* DONE (bnbc)
* installing to library 'D:/biocbuild/bbs-3.12-bioc/R/library'
package 'bnbc' successfully unpacked and MD5 sums checked