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INSTALL report for affycoretools on tokay1

This page was generated on 2020-12-01 11:57:50 -0500 (Tue, 01 Dec 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE affycoretools PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 28/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
affycoretools 1.62.0
James W. MacDonald
Snapshot Date: 2020-11-30 14:42:56 -0500 (Mon, 30 Nov 2020)
URL: https://git.bioconductor.org/packages/affycoretools
Branch: RELEASE_3_12
Last Commit: c9779e4
Last Changed Date: 2020-10-27 10:27:23 -0500 (Tue, 27 Oct 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: affycoretools
Version: 1.62.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/affycoretools_1.62.0.tar.gz && rm -rf affycoretools.buildbin-libdir && mkdir affycoretools.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=affycoretools.buildbin-libdir affycoretools_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL affycoretools_1.62.0.zip && rm affycoretools_1.62.0.tar.gz affycoretools_1.62.0.zip
StartedAt: 2020-11-30 18:34:01 -0500 (Mon, 30 Nov 2020)
EndedAt: 2020-11-30 18:35:46 -0500 (Mon, 30 Nov 2020)
EllapsedTime: 104.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/affycoretools_1.62.0.tar.gz && rm -rf affycoretools.buildbin-libdir && mkdir affycoretools.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=affycoretools.buildbin-libdir affycoretools_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL affycoretools_1.62.0.zip && rm affycoretools_1.62.0.tar.gz affycoretools_1.62.0.zip
###
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100 6444k  100 6444k    0     0  42.3M      0 --:--:-- --:--:-- --:--:-- 43.4M

install for i386

* installing *source* package 'affycoretools' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'affycoretools'
    finding HTML links ... done
    affycoretools-defunct                   html  
    affycoretools                           html  
    affystart                               html  
    annotateEset                            html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo12JDp/R.INSTALL1d542c2160d2/affycoretools/man/annotateEset.Rd:44: file link 'columns' in package 'AnnotationDbi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo12JDp/R.INSTALL1d542c2160d2/affycoretools/man/annotateEset.Rd:47: file link 'mapIds' in package 'AnnotationDbi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo12JDp/R.INSTALL1d542c2160d2/affycoretools/man/annotateEset.Rd:52: file link 'rma' in package 'oligo' does not exist and so has been treated as a topic
    dataAndHeatmapPage                      html  
    doGlimma                                html  
    entrezLinks                             html  
    fixHeaderAndGo                          html  
    geneSetPage                             html  
    finding level-2 HTML links ... done

    getCols                                 html  
    getMainProbes                           html  
    gsHeatmap                               html  
    intNames                                html  
    make.cl                                 html  
    makeGoGeneTable                         html  
    makeGoTable                             html  
    makeHmap                                html  
    makeImages                              html  
    makeIndices                             html  
    makeVenn                                html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo12JDp/R.INSTALL1d542c2160d2/affycoretools/man/makeVenn.Rd:91: file link 'glmQLFit' in package 'edgeR' does not exist and so has been treated as a topic
    maplot                                  html  
    mirna2mrna                              html  
    outputRomer                             html  
    pca.legend                              html  
    plotDeg                                 html  
    plotPCA                                 html  
    runRomer                                html  
    tableFilt                               html  
    venn4Way                                html  
    vennCounts2                             html  
    vennInLine                              html  
    vennPage                                html  
    vennSelect2                             html  
    writeFit                                html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo12JDp/R.INSTALL1d542c2160d2/affycoretools/man/writeFit.Rd:39: file link 'write.fit' in package 'limma' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'affycoretools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'affycoretools' as affycoretools_1.62.0.zip
* DONE (affycoretools)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'affycoretools' successfully unpacked and MD5 sums checked