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INSTALL report for affycomp on riesling1

This page was generated on 2020-10-28 13:27:29 -0400 (Wed, 28 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE affycomp PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 25/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
affycomp 1.66.0
Rafael A. Irizarry
Snapshot Date: 2020-10-27 13:12:07 -0400 (Tue, 27 Oct 2020)
URL: https://git.bioconductor.org/packages/affycomp
Branch: RELEASE_3_12
Last Commit: 388d01a
Last Changed Date: 2020-10-27 10:22:30 -0400 (Tue, 27 Oct 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK YES, new version is higher than in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK YES, new version is higher than in internal repository
riesling1 Windows Server 2019 Standard / x64 [ OK ] OK  WARNINGS  OK 
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK YES, new version is higher than in internal repository

Summary

Package: affycomp
Version: 1.66.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/affycomp_1.66.0.tar.gz && rm -rf affycomp.buildbin-libdir && mkdir affycomp.buildbin-libdir && D:\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=affycomp.buildbin-libdir affycomp_1.66.0.tar.gz && D:\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL affycomp_1.66.0.zip && rm affycomp_1.66.0.tar.gz affycomp_1.66.0.zip
StartedAt: 2020-10-27 16:41:31 -0400 (Tue, 27 Oct 2020)
EndedAt: 2020-10-27 16:42:40 -0400 (Tue, 27 Oct 2020)
EllapsedTime: 69.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/affycomp_1.66.0.tar.gz && rm -rf affycomp.buildbin-libdir && mkdir affycomp.buildbin-libdir && D:\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=affycomp.buildbin-libdir affycomp_1.66.0.tar.gz && D:\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL affycomp_1.66.0.zip && rm affycomp_1.66.0.tar.gz affycomp_1.66.0.zip
###
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install for i386

* installing *source* package 'affycomp' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'affycomp'
    finding HTML links ... done
    SD                                      html  
    affycomp.compfigs.auxiliary             html  
    affycomp.figures.auxiliary              html  
    affycomp.table                          html  
    affycompPlot                            html  
    assessAll                               html  
    assessDilution                          html  
    assessSD                                html  
    assessSpikeIn                           html  
    assessSpikeIn2                          html  
    dilution.phenodata                      html  
    exprset.log                             html  
    hgu133a.spikein.phenodata               html  
    mas5.assessment                         html  
Rd warning: D:/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0mawnL/R.INSTALL221c23ab5a1c/affycomp/man/mas5.assessment.Rd:10: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
    readin                                  html  
    remove.hgu133a.xhyb                     html  
    spikein.phenodata                       html  
    xhyb                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'affycomp' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'affycomp' as affycomp_1.66.0.zip
* DONE (affycomp)
* installing to library 'D:/biocbuild/bbs-3.12-bioc/R/library'
package 'affycomp' successfully unpacked and MD5 sums checked