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INSTALL report for ChIPanalyser on tokay1

This page was generated on 2021-05-06 12:30:12 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the ChIPanalyser package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 282/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChIPanalyser 1.12.0  (landing page)
Patrick C.N. Martin
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/ChIPanalyser
Branch: RELEASE_3_12
Last Commit: 126b7fa
Last Changed Date: 2020-10-27 11:27:08 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: ChIPanalyser
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/ChIPanalyser_1.12.0.tar.gz && rm -rf ChIPanalyser.buildbin-libdir && mkdir ChIPanalyser.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPanalyser.buildbin-libdir ChIPanalyser_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL ChIPanalyser_1.12.0.zip && rm ChIPanalyser_1.12.0.tar.gz ChIPanalyser_1.12.0.zip
StartedAt: 2021-05-05 17:59:09 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 18:00:44 -0400 (Wed, 05 May 2021)
EllapsedTime: 95.3 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/ChIPanalyser_1.12.0.tar.gz && rm -rf ChIPanalyser.buildbin-libdir && mkdir ChIPanalyser.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPanalyser.buildbin-libdir ChIPanalyser_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL ChIPanalyser_1.12.0.zip && rm ChIPanalyser_1.12.0.tar.gz ChIPanalyser_1.12.0.zip
###
##############################################################################
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100  535k  100  535k    0     0  19.3M      0 --:--:-- --:--:-- --:--:-- 20.1M

install for i386

* installing *source* package 'ChIPanalyser' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'drop' in package 'ChIPanalyser'
** help
*** installing help indices
  converting help for package 'ChIPanalyser'
    finding HTML links ... done
    BPFrequency-methods                     html  
    BPFrequency                             html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/BPFrequency.Rd:33: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/BPFrequency.Rd:35: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
    BPFrequency_--methods                   html  
    BPFrequency_-                           html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/BPFrequency_-.Rd:41: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/BPFrequency_-.Rd:59: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/BPFrequency_-.Rd:60: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
    ChIPScore-class                         html  
    ChIPanalyser-package                    html  
    DNASequenceLength-methods               html  
    DNASequenceLength                       html  
    GRList-class                            html  
    PFMFormat-methods                       html  
    PFMFormat                               html  
    PFMFormat_--methods                     html  
    PFMFormat_                              html  
    PWMThreshold-methods                    html  
    PWMThreshold                            html  
    PWMThreshold_--methods                  html  
    PWMThreshold_-                          html  
    PWMpseudocount-methods                  html  
    PWMpseudocount                          html  
    PWMpseudocount_--methods                html  
    PWMpseudocount_-                        html  
    PositionFrequencyMatrix-methods         html  
    PositionFrequencyMatrix                 html  
    PositionFrequencyMatrix_--methods       html  
    PositionFrequencyMatrix_-               html  
    PositionWeightMatrix-methods            html  
    PositionWeightMatrix                    html  
    PositionWeightMatrix_--methods          html  
    PositionWeightMatrix_-                  html  
    averageExpPWMScore-methods              html  
    averageExpPWMScore                      html  
    backgroundSignal-methods                html  
    backgroundSignal                        html  
    backgroundSignal_--methods              html  
    backgroundSignal_-                      html  
    boundMolecules-methods                  html  
    boundMolecules                          html  
    boundMolecules_--methods                html  
    boundMolecules_-                        html  
    chipMean-methods                        html  
    chipMean                                html  
    chipMean_--methods                      html  
    chipMean_-                              html  
    chipSd-methods                          html  
    chipSd                                  html  
    chipSd_--methods                        html  
    chipSd_-                                html  
    chipSmooth-methods                      html  
    chipSmooth                              html  
    chipSmooth_--methods                    html  
    chipSmooth_-                            html  
    computeChIPProfile                      html  
    finding level-2 HTML links ... done

    computeGenomeWideScores                 html  
    computeOccupancy                        html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/computeOccupancy.Rd:66: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/computeOccupancy.Rd:68: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    computeOptimal                          html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/computeOptimal.Rd:29: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/computeOptimal.Rd:42: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    computePWMScore                         html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/computePWMScore.Rd:20: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/computePWMScore.Rd:28: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/computePWMScore.Rd:38: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/computePWMScore.Rd:64: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/computePWMScore.Rd:65: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    data                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/data.Rd:24: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/data.Rd:26: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/data.Rd:32: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    drop-methods                            html  
    drop                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/drop.Rd:29: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    genomicProfiles-class                   html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/genomicProfiles-class.Rd:29: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
    genomicProfiles                         html  
    genomicProfilesInternal-class           html  
    initialize-methods                      html  
    lambdaPWM-methods                       html  
    lambdaPWM                               html  
    lambdaPWM_--methods                     html  
    lambdaPWM_                              html  
    loci-class                              html  
    loci-methods                            html  
    loci                                    html  
    lociWidth-methods                       html  
    lociWidth                               html  
    lociWidth_--methods                     html  
    lociWidth_                              html  
    maxPWMScore-methods                     html  
    maxPWMScore                             html  
    maxSignal-methods                       html  
    maxSignal                               html  
    maxSignal_--methods                     html  
    maxSignal_-                             html  
    minPWMScore-methods                     html  
    minPWMScore                             html  
    naturalLog-methods                      html  
    naturalLog                              html  
    naturalLog_--methods                    html  
    naturalLog_-                            html  
    noOfSites-methods                       html  
    noOfSites                               html  
    noOfSites_--methods                     html  
    noOfSites_-                             html  
    noiseFilter-methods                     html  
    noiseFilter                             html  
    noiseFilter_--methods                   html  
    noiseFilter_                            html  
    nos-class                               html  
    parameterOptions-class                  html  
    parameterOptions                        html  
    ploidy-methods                          html  
    ploidy                                  html  
    ploidy_--methods                        html  
    ploidy_-                                html  
    plotOccupancyProfile                    html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/plotOccupancyProfile.Rd:20: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/plotOccupancyProfile.Rd:29: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/plotOccupancyProfile.Rd:34: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/plotOccupancyProfile.Rd:47: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    plotOptimalHeatMaps                     html  
    processingChIP                          html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/processingChIP.Rd:23: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpeIzQCD/R.INSTALL1cb473c15328/ChIPanalyser/man/processingChIP.Rd:48: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    profileAccuracyEstimate                 html  
    profiles-methods                        html  
    removeBackground-methods                html  
    removeBackground                        html  
    removeBackground_--methods              html  
    removeBackground_-                      html  
    scores-methods                          html  
    scores                                  html  
    searchSites                             html  
    show-methods                            html  
    stepSize-methods                        html  
    stepSize                                html  
    stepSize_--methods                      html  
    stepSize_-                              html  
    strandRule-methods                      html  
    strandRule                              html  
    strandRule_--methods                    html  
    strandRule_-                            html  
    whichstrand-methods                     html  
    whichstrand                             html  
    whichstrand_--methods                   html  
    whichstrand_-                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ChIPanalyser' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChIPanalyser' as ChIPanalyser_1.12.0.zip
* DONE (ChIPanalyser)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'ChIPanalyser' successfully unpacked and MD5 sums checked