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INSTALL report for BiocIO on tokay1

This page was generated on 2021-05-06 12:30:01 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the BiocIO package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 162/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocIO 1.0.1  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/BiocIO
Branch: RELEASE_3_12
Last Commit: 724abe7
Last Changed Date: 2020-11-09 08:42:03 -0400 (Mon, 09 Nov 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: BiocIO
Version: 1.0.1
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/BiocIO_1.0.1.tar.gz && rm -rf BiocIO.buildbin-libdir && mkdir BiocIO.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocIO.buildbin-libdir BiocIO_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BiocIO_1.0.1.zip && rm BiocIO_1.0.1.tar.gz BiocIO_1.0.1.zip
StartedAt: 2021-05-05 18:27:51 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 18:28:36 -0400 (Wed, 05 May 2021)
EllapsedTime: 44.5 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/BiocIO_1.0.1.tar.gz && rm -rf BiocIO.buildbin-libdir && mkdir BiocIO.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocIO.buildbin-libdir BiocIO_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BiocIO_1.0.1.zip && rm BiocIO_1.0.1.tar.gz BiocIO_1.0.1.zip
###
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100  8946  100  8946    0     0   541k      0 --:--:-- --:--:-- --:--:--  582k

install for i386

* installing *source* package 'BiocIO' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BiocIO'
    finding HTML links ... done
    BiocFile-class                          html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4aRfiC/R.INSTALL1bfc78e21ef/BiocIO/man/BiocFile-class.Rd:146: file link 'TwoBitFile' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4aRfiC/R.INSTALL1bfc78e21ef/BiocIO/man/BiocFile-class.Rd:146: file link 'BEDFile' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4aRfiC/R.INSTALL1bfc78e21ef/BiocIO/man/BiocFile-class.Rd:147: file link 'GFFFile' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4aRfiC/R.INSTALL1bfc78e21ef/BiocIO/man/BiocFile-class.Rd:147: file link 'WIGFile' in package 'rtracklayer' does not exist and so has been treated as a topic
    export                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4aRfiC/R.INSTALL1bfc78e21ef/BiocIO/man/export.Rd:59: file link 'GFFFile' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4aRfiC/R.INSTALL1bfc78e21ef/BiocIO/man/export.Rd:60: file link 'BEDFile' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4aRfiC/R.INSTALL1bfc78e21ef/BiocIO/man/export.Rd:61: file link 'BED15File' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4aRfiC/R.INSTALL1bfc78e21ef/BiocIO/man/export.Rd:62: file link 'BEDGraphFile' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp4aRfiC/R.INSTALL1bfc78e21ef/BiocIO/man/export.Rd:63: file link 'WIGFile' in package 'rtracklayer' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BiocIO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocIO' as BiocIO_1.0.1.zip
* DONE (BiocIO)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'BiocIO' successfully unpacked and MD5 sums checked