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INSTALL report for BiocIO on tokay1

This page was generated on 2021-01-17 11:52:46 -0500 (Sun, 17 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE BiocIO PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 162/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocIO 1.0.1
Bioconductor Package Maintainer
Snapshot Date: 2021-01-16 14:41:12 -0500 (Sat, 16 Jan 2021)
URL: https://git.bioconductor.org/packages/BiocIO
Branch: RELEASE_3_12
Last Commit: 724abe7
Last Changed Date: 2020-11-09 08:42:03 -0500 (Mon, 09 Nov 2020)
malbec1 Linux (Ubuntu 18.04.5 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BiocIO
Version: 1.0.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/BiocIO_1.0.1.tar.gz && rm -rf BiocIO.buildbin-libdir && mkdir BiocIO.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocIO.buildbin-libdir BiocIO_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BiocIO_1.0.1.zip && rm BiocIO_1.0.1.tar.gz BiocIO_1.0.1.zip
StartedAt: 2021-01-16 18:31:26 -0500 (Sat, 16 Jan 2021)
EndedAt: 2021-01-16 18:31:53 -0500 (Sat, 16 Jan 2021)
EllapsedTime: 27.2 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/BiocIO_1.0.1.tar.gz && rm -rf BiocIO.buildbin-libdir && mkdir BiocIO.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocIO.buildbin-libdir BiocIO_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BiocIO_1.0.1.zip && rm BiocIO_1.0.1.tar.gz BiocIO_1.0.1.zip
###
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100  8946  100  8946    0     0   192k      0 --:--:-- --:--:-- --:--:--  213k

install for i386

* installing *source* package 'BiocIO' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BiocIO'
    finding HTML links ... done
    BiocFile-class                          html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpIDYybe/R.INSTALL274063f57608/BiocIO/man/BiocFile-class.Rd:146: file link 'TwoBitFile' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpIDYybe/R.INSTALL274063f57608/BiocIO/man/BiocFile-class.Rd:146: file link 'BEDFile' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpIDYybe/R.INSTALL274063f57608/BiocIO/man/BiocFile-class.Rd:147: file link 'GFFFile' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpIDYybe/R.INSTALL274063f57608/BiocIO/man/BiocFile-class.Rd:147: file link 'WIGFile' in package 'rtracklayer' does not exist and so has been treated as a topic
    export                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpIDYybe/R.INSTALL274063f57608/BiocIO/man/export.Rd:59: file link 'GFFFile' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpIDYybe/R.INSTALL274063f57608/BiocIO/man/export.Rd:60: file link 'BEDFile' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpIDYybe/R.INSTALL274063f57608/BiocIO/man/export.Rd:61: file link 'BED15File' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpIDYybe/R.INSTALL274063f57608/BiocIO/man/export.Rd:62: file link 'BEDGraphFile' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpIDYybe/R.INSTALL274063f57608/BiocIO/man/export.Rd:63: file link 'WIGFile' in package 'rtracklayer' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BiocIO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocIO' as BiocIO_1.0.1.zip
* DONE (BiocIO)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'BiocIO' successfully unpacked and MD5 sums checked