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BUILD BIN report for BioQC on tokay1

This page was generated on 2020-11-23 12:19:23 -0500 (Mon, 23 Nov 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE BioQC PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 184/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BioQC 1.18.0
Jitao David Zhang
Snapshot Date: 2020-11-22 14:42:09 -0500 (Sun, 22 Nov 2020)
URL: https://git.bioconductor.org/packages/BioQC
Branch: RELEASE_3_12
Last Commit: 93ea3cd
Last Changed Date: 2020-10-27 11:09:46 -0500 (Tue, 27 Oct 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BioQC
Version: 1.18.0
Command: rm -rf BioQC.buildbin-libdir && mkdir BioQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BioQC.buildbin-libdir BioQC_1.18.0.tar.gz
StartedAt: 2020-11-23 09:07:10 -0500 (Mon, 23 Nov 2020)
EndedAt: 2020-11-23 09:08:08 -0500 (Mon, 23 Nov 2020)
EllapsedTime: 57.9 seconds
RetCode: 0
Status:  OK  
PackageFile: BioQC_1.18.0.zip
PackageFileSize: 1.13 MiB

Command output

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###
### Running command:
###
###   rm -rf BioQC.buildbin-libdir && mkdir BioQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BioQC.buildbin-libdir BioQC_1.18.0.tar.gz
###
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install for i386

* installing *source* package 'BioQC' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG `C:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c gini.c -o gini.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG `C:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG `C:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c read_gmt.cpp -o read_gmt.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG `C:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c stat_rank.c -o stat_rank.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG `C:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wmw_test.c -o wmw_test.o
wmw_test.c: In function 'wmw_test_list':
wmw_test.c:105: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 
wmw_test.c: In function 'wmw_test':
wmw_test.c:155: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 
wmw_test.c: In function 'signed_wmw_test_list':
wmw_test.c:188: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 
wmw_test.c: In function 'signed_wmw_test':
wmw_test.c:257: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o BioQC.dll tmp.def gini.o init.o read_gmt.o stat_rank.o wmw_test.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/BioQC.buildbin-libdir/00LOCK-BioQC/00new/BioQC/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BioQC'
    finding HTML links ... done
    BaseIndexList-class                     html  
    GmtList-class                           html  
    GmtList                                 html  
    IndexList-class                         html  
    IndexList                               html  
    SignedGenesets-class                    html  
    SignedGenesets                          html  
    SignedIndexList-class                   html  
    SignedIndexList                         html  
    absLog10p                               html  
    appendGmtList                           html  
    as.GmtList                              html  
    entropy                                 html  
    entropyDiversity                        html  
    entropySpecificity                      html  
    filterBySize                            html  
    filterPmat                              html  
    gini                                    html  
    gmtlist2signedGenesets                  html  
    gsDesc                                  html  
    gsGeneCount                             html  
    gsGenes                                 html  
    gsName                                  html  
    gsNamespace                             html  
    hasNamespace                            html  
    isValidBaseIndexList                    html  
    isValidGmtList                          html  
    isValidIndexList                        html  
    isValidSignedGenesets                   html  
    isValidSignedIndexList                  html  
    matchGenes                              html  
    offset-set                              html  
    offset                                  html  
    readGmt                                 html  
    readSignedGmt                           html  
    sampleSpecialization                    html  
    setDescAsNamespace                      html  
    setGsNamespace                          html  
    setNamespace                            html  
    show-GmtList-method                     html  
    show-IndexList-method                   html  
    show-SignedGenesets-method              html  
    show-SignedIndexList-method             html  
    simplifyMatrix                          html  
    sub-.GmtList                            html  
    sub-sub-.GmtList                        html  
    uniqGenesetsByNamespace                 html  
    valTypes                                html  
    wmwTest                                 html  
    wmwTestInR                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BioQC' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG `C:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c gini.c -o gini.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG `C:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG `C:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c read_gmt.cpp -o read_gmt.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG `C:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c stat_rank.c -o stat_rank.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG `C:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wmw_test.c -o wmw_test.o
wmw_test.c: In function 'wmw_test_list':
wmw_test.c:105: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 
wmw_test.c: In function 'wmw_test':
wmw_test.c:155: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 
wmw_test.c: In function 'signed_wmw_test_list':
wmw_test.c:188: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 
wmw_test.c: In function 'signed_wmw_test':
wmw_test.c:257: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o BioQC.dll tmp.def gini.o init.o read_gmt.o stat_rank.o wmw_test.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/BioQC.buildbin-libdir/BioQC/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BioQC' as BioQC_1.18.0.zip
* DONE (BioQC)