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INSTALL report for BiRewire on riesling1

This page was generated on 2020-10-28 13:28:09 -0400 (Wed, 28 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE BiRewire PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 191/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiRewire 3.22.0
Andrea Gobbi
Snapshot Date: 2020-10-27 13:12:07 -0400 (Tue, 27 Oct 2020)
URL: https://git.bioconductor.org/packages/BiRewire
Branch: RELEASE_3_12
Last Commit: 161ba9f
Last Changed Date: 2020-10-27 10:52:46 -0400 (Tue, 27 Oct 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS YES, new version is higher than in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK YES, new version is higher than in internal repository
riesling1 Windows Server 2019 Standard / x64 [ OK ] OK  WARNINGS  OK 
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK YES, new version is higher than in internal repository

Summary

Package: BiRewire
Version: 3.22.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/BiRewire_3.22.0.tar.gz && rm -rf BiRewire.buildbin-libdir && mkdir BiRewire.buildbin-libdir && D:\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiRewire.buildbin-libdir BiRewire_3.22.0.tar.gz && D:\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BiRewire_3.22.0.zip && rm BiRewire_3.22.0.tar.gz BiRewire_3.22.0.zip
StartedAt: 2020-10-27 16:38:22 -0400 (Tue, 27 Oct 2020)
EndedAt: 2020-10-27 16:39:37 -0400 (Tue, 27 Oct 2020)
EllapsedTime: 74.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/BiRewire_3.22.0.tar.gz && rm -rf BiRewire.buildbin-libdir && mkdir BiRewire.buildbin-libdir && D:\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiRewire.buildbin-libdir BiRewire_3.22.0.tar.gz && D:\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BiRewire_3.22.0.zip && rm BiRewire_3.22.0.tar.gz BiRewire_3.22.0.zip
###
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100  296k  100  296k    0     0  1536k      0 --:--:-- --:--:-- --:--:-- 1544k

install for i386

* installing *source* package 'BiRewire' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"D:/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c BiRewire.c -o BiRewire.o
BiRewire.c: In function 'rewire_sparse':
BiRewire.c:1066:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
               ~^~~
BiRewire.c: In function 'rewire_sparse_ex':
BiRewire.c:1149:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
               ~^~~
"C:/rtools40/mingw32/bin/"gcc  -I"D:/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c interface.c -o interface.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o BiRewire.dll tmp.def BiRewire.o interface.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.12-bioc/R/bin/i386 -lR
installing to D:/biocbuild/bbs-3.12-bioc/meat/BiRewire.buildbin-libdir/00LOCK-BiRewire/00new/BiRewire/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BiRewire'
    finding HTML links ... done
    BRCA_binary_matrix                      html  
    BiRewire-package                        html  
    birewire.analysis.bipartite             html  
    finding level-2 HTML links ... done

    birewire.analysis.dsg                   html  
    birewire.analysis.undirected            html  
    birewire.bipartite.from.incidence       html  
    birewire.build.dsg                      html  
    birewire.induced.bipartite              html  
    birewire.load.dsg                       html  
    birewire.rewire.bipartite               html  
    birewire.rewire.bipartite.and.projections
                                            html  
    birewire.rewire.dsg                     html  
    birewire.rewire.undirected              html  
    birewire.sampler.bipartite              html  
    birewire.sampler.dsg                    html  
    birewire.sampler.undirected             html  
    birewire.similarity                     html  
    birewire.similarity.dsg                 html  
    birewire.slum.to.sparseMatrix           html  
    birewire.visual.monitoring.bipartite    html  
    birewire.visual.monitoring.dsg          html  
    birewire.visual.monitoring.undirected   html  
    test_dsg                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BiRewire' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c BiRewire.c -o BiRewire.o
BiRewire.c: In function 'rewire_sparse':
BiRewire.c:1066:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
               ~^~~
BiRewire.c: In function 'rewire_sparse_ex':
BiRewire.c:1149:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
               ~^~~
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c interface.c -o interface.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o BiRewire.dll tmp.def BiRewire.o interface.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.12-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.12-bioc/meat/BiRewire.buildbin-libdir/BiRewire/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiRewire' as BiRewire_3.22.0.zip
* DONE (BiRewire)
* installing to library 'D:/biocbuild/bbs-3.12-bioc/R/library'
package 'BiRewire' successfully unpacked and MD5 sums checked