Paul J. McMurdie
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/biomformat |
| Branch: RELEASE_3_12 |
| Last Commit: dc18859 |
| Last Changed Date: 2020-10-27 11:09:49 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:30:03 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the biomformat package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 178/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biomformat 1.18.0 (landing page) Paul J. McMurdie
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: biomformat |
| Version: 1.18.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/biomformat_1.18.0.tar.gz && rm -rf biomformat.buildbin-libdir && mkdir biomformat.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biomformat.buildbin-libdir biomformat_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL biomformat_1.18.0.zip && rm biomformat_1.18.0.tar.gz biomformat_1.18.0.zip |
| StartedAt: 2021-05-05 16:57:03 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 16:57:44 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 41.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/biomformat_1.18.0.tar.gz && rm -rf biomformat.buildbin-libdir && mkdir biomformat.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biomformat.buildbin-libdir biomformat_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL biomformat_1.18.0.zip && rm biomformat_1.18.0.tar.gz biomformat_1.18.0.zip
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install for i386
* installing *source* package 'biomformat' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'nrow' from package 'base' in package 'biomformat'
Creating a generic function for 'ncol' from package 'base' in package 'biomformat'
Creating a generic function for 'rownames' from package 'base' in package 'biomformat'
Creating a generic function for 'colnames' from package 'base' in package 'biomformat'
** help
*** installing help indices
converting help for package 'biomformat'
finding HTML links ... done
biom-class html
biom-methods html
finding level-2 HTML links ... done
biom-package html
biom_data-methods html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMRHiYk/R.INSTALLf3454ad4bdd/biomformat/man/biom_data-methods.Rd:46: missing link 'plyr-package'
biom_shape-methods html
colnames-methods html
header-methods html
make_biom html
matrix_element_type-methods html
ncol-methods html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMRHiYk/R.INSTALLf3454ad4bdd/biomformat/man/ncol-methods.Rd:6: file link 'ncol' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMRHiYk/R.INSTALLf3454ad4bdd/biomformat/man/ncol-methods.Rd:19: file link 'ncol' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMRHiYk/R.INSTALLf3454ad4bdd/biomformat/man/ncol-methods.Rd:31: file link 'ncol' in package 'base' does not exist and so has been treated as a topic
nrow-methods html
observation_metadata-methods html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMRHiYk/R.INSTALLf3454ad4bdd/biomformat/man/observation_metadata-methods.Rd:30: missing link 'plyr-package'
read_biom html
read_hdf5_biom html
rownames-methods html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMRHiYk/R.INSTALLf3454ad4bdd/biomformat/man/rownames-methods.Rd:6: file link 'rownames' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMRHiYk/R.INSTALLf3454ad4bdd/biomformat/man/rownames-methods.Rd:19: file link 'rownames' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMRHiYk/R.INSTALLf3454ad4bdd/biomformat/man/rownames-methods.Rd:31: file link 'rownames' in package 'base' does not exist and so has been treated as a topic
sample_metadata-methods html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpMRHiYk/R.INSTALLf3454ad4bdd/biomformat/man/sample_metadata-methods.Rd:30: missing link 'plyr-package'
show-methods html
write_biom html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'biomformat' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'biomformat' as biomformat_1.18.0.zip
* DONE (biomformat)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'biomformat' successfully unpacked and MD5 sums checked