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CHECK report for BDMMAcorrect on tokay1

This page was generated on 2021-05-06 12:29:59 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the BDMMAcorrect package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 132/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BDMMAcorrect 1.8.0  (landing page)
ZHENWEI DAI
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/BDMMAcorrect
Branch: RELEASE_3_12
Last Commit: 0e87f21
Last Changed Date: 2020-10-27 11:40:39 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: BDMMAcorrect
Version: 1.8.0
Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BDMMAcorrect.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings BDMMAcorrect_1.8.0.tar.gz
StartedAt: 2021-05-06 00:40:39 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 00:45:21 -0400 (Thu, 06 May 2021)
EllapsedTime: 281.8 seconds
RetCode: 0
Status:   OK   
CheckDir: BDMMAcorrect.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BDMMAcorrect.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings BDMMAcorrect_1.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/BDMMAcorrect.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BDMMAcorrect/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BDMMAcorrect' version '1.8.0'
* package encoding: UTF-8
* checking package namespace information ... NOTE
  Namespace with empty importFrom: 'RcppEigen'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BDMMAcorrect' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BDMMAcorrect/libs/i386/BDMMAcorrect.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)
File 'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BDMMAcorrect/libs/x64/BDMMAcorrect.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'Test.R'
 OK
** running tests for arch 'x64' ...
  Running 'Test.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.12-bioc/meat/BDMMAcorrect.Rcheck/00check.log'
for details.

Installation output

BDMMAcorrect.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/BDMMAcorrect_1.8.0.tar.gz && rm -rf BDMMAcorrect.buildbin-libdir && mkdir BDMMAcorrect.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BDMMAcorrect.buildbin-libdir BDMMAcorrect_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BDMMAcorrect_1.8.0.zip && rm BDMMAcorrect_1.8.0.tar.gz BDMMAcorrect_1.8.0.zip
###
##############################################################################
##############################################################################


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                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  371k  100  371k    0     0  16.3M      0 --:--:-- --:--:-- --:--:-- 17.2M

install for i386

* installing *source* package 'BDMMAcorrect' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include'   -I"C:/extsoft/include"  -DARMA_DONT_USE_OPENMP   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c MCMC_algorithm.cpp -o MCMC_algorithm.o
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:397,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from MCMC_algorithm.cpp:3:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128>  { enum { value = true }; };
                                       ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128i> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128d> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4f> { typedef float  type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
                                           ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet2d> { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
                                           ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4i> { typedef int    type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
                                           ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4f>
                                   ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4i>
                                   ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet2d>
                                   ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4f,4>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet2d,2>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4i,4>& kernel) {
                                  ^
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:377,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from MCMC_algorithm.cpp:3:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from MCMC_algorithm.cpp:3:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<int, -1>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8:   required from 'struct Eigen::internal::traits<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from 'class Eigen::Array<int, 1, -1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:101:22:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from MCMC_algorithm.cpp:3:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<int, 1, -1>, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Array<int, 1, -1>, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Array<int, 1, -1>, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from 'class Eigen::Array<int, 1, -1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:101:22:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Ref<Eigen::Array<int, 1, -1> > >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::Ref<Eigen::Array<int, 1, -1> > >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from 'class Eigen::MapBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 0>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from 'class Eigen::MapBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:59:34:   required from 'class Eigen::RefBase<Eigen::Ref<Eigen::Array<int, 1, -1> > >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:193:76:   required from 'class Eigen::Ref<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:694:17:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from MCMC_algorithm.cpp:3:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from MCMC_algorithm.cpp:3:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<float, 4, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<float>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from MCMC_algorithm.cpp:3:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from MCMC_algorithm.cpp:3:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, 4, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<double>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from MCMC_algorithm.cpp:3:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from 'class Eigen::SparseMatrix<double, 0, int>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from MCMC_algorithm.cpp:3:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from 'class Eigen::TransposeImpl<Eigen::Matrix<int, -1, 1>, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from 'class Eigen::Transpose<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, -1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include'   -I"C:/extsoft/include"  -DARMA_DONT_USE_OPENMP   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:397,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:5:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128>  { enum { value = true }; };
                                       ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128i> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128d> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4f> { typedef float  type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
                                           ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet2d> { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
                                           ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4i> { typedef int    type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
                                           ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4f>
                                   ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4i>
                                   ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet2d>
                                   ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4f,4>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet2d,2>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4i,4>& kernel) {
                                  ^
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:377,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:5:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:5:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<int, -1>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8:   required from 'struct Eigen::internal::traits<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from 'class Eigen::Array<int, 1, -1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:101:22:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:5:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<int, 1, -1>, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Array<int, 1, -1>, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Array<int, 1, -1>, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from 'class Eigen::Array<int, 1, -1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:101:22:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Ref<Eigen::Array<int, 1, -1> > >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from 'class Eigen::ArrayBase<Eigen::Ref<Eigen::Array<int, 1, -1> > >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from 'class Eigen::MapBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 0>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34:   required from 'class Eigen::MapBase<Eigen::Ref<Eigen::Array<int, 1, -1> >, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:59:34:   required from 'class Eigen::RefBase<Eigen::Ref<Eigen::Array<int, 1, -1> > >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:193:76:   required from 'class Eigen::Ref<Eigen::Array<int, 1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:694:17:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:5:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:5:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<float, 4, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<float>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:5:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:5:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, 4, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<double>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:5:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from 'class Eigen::SparseMatrix<double, 0, int>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:5:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from 'class Eigen::TransposeImpl<Eigen::Matrix<int, -1, 1>, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from 'class Eigen::Transpose<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, -1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o BDMMAcorrect.dll tmp.def MCMC_algorithm.o RcppExports.o -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -O2 -msse2 -mfpmath=sse -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/BDMMAcorrect.buildbin-libdir/00LOCK-BDMMAcorrect/00new/BDMMAcorrect/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BDMMAcorrect'
    finding HTML links ... done
    BDMMA                                   html  
    L_mean                                  html  
    Microbiome_dat                          html  
    VBatch                                  html  
    fdr_cut                                 html  
    trace_plot                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BDMMAcorrect' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include'   -I"C:/extsoft/include"  -DARMA_DONT_USE_OPENMP   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c MCMC_algorithm.cpp -o MCMC_algorithm.o
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:397,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from MCMC_algorithm.cpp:3:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128>  { enum { value = true }; };
                                       ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128i> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128d> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4f> { typedef float  type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
                                           ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet2d> { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
                                           ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4i> { typedef int    type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
                                           ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4f>
                                   ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4i>
                                   ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet2d>
                                   ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4f,4>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet2d,2>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4i,4>& kernel) {
                                  ^
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:377,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from MCMC_algorithm.cpp:3:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from MCMC_algorithm.cpp:3:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from MCMC_algorithm.cpp:3:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<float, 4, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<float>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from MCMC_algorithm.cpp:3:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from MCMC_algorithm.cpp:3:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, 4, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<double>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from MCMC_algorithm.cpp:3:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from 'class Eigen::SparseMatrix<double, 0, int>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from MCMC_algorithm.cpp:3:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<int, -1>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from MCMC_algorithm.cpp:3:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from 'class Eigen::TransposeImpl<Eigen::Matrix<int, -1, 1>, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from 'class Eigen::Transpose<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, -1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include'   -I"C:/extsoft/include"  -DARMA_DONT_USE_OPENMP   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:397,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:5:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128>  { enum { value = true }; };
                                       ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128i> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct is_arithmetic<__m128d> { enum { value = true }; };
                                        ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4f> { typedef float  type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
                                           ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet2d> { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
                                           ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4i> { typedef int    type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
                                           ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4f>
                                   ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet4i>
                                   ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 struct palign_impl<Offset,Packet2d>
                                   ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4f,4>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet2d,2>& kernel) {
                                  ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4i,4>& kernel) {
                                  ^
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:377,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:5:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:5:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:5:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<float, 4, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<float>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__vector(4) float'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:5:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:5:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, 4, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<double>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:5:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from 'class Eigen::SparseMatrix<double, 0, int>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__vector(2) double'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:370,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:5:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<int, -1>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Core:439,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:5:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from 'class Eigen::TransposeImpl<Eigen::Matrix<int, -1, 1>, Eigen::Dense>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from 'class Eigen::Transpose<Eigen::Matrix<int, -1, 1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 0>':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 3>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1> >'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, -1>'
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36:   required from here
C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__vector(2) long long int'} [-Wignored-attributes]
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o BDMMAcorrect.dll tmp.def MCMC_algorithm.o RcppExports.o -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -O2 -msse2 -mfpmath=sse -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/BDMMAcorrect.buildbin-libdir/BDMMAcorrect/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BDMMAcorrect' as BDMMAcorrect_1.8.0.zip
* DONE (BDMMAcorrect)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'BDMMAcorrect' successfully unpacked and MD5 sums checked

Tests output

BDMMAcorrect.Rcheck/tests_i386/Test.Rout


R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("BDMMAcorrect")
This is vegan 2.5-7

Attaching package: 'ellipse'

The following object is masked from 'package:graphics':

    pairs


Attaching package: 'MatrixGenerics'

The following objects are masked from 'package:matrixStats':

    colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
    colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
    colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
    colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
    colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
    colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
    colWeightedMeans, colWeightedMedians, colWeightedSds,
    colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
    rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
    rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
    rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
    rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
    rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
    rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
    rowWeightedSds, rowWeightedVars


Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min


Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid


Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: 'Biobase'

The following object is masked from 'package:MatrixGenerics':

    rowMedians

The following objects are masked from 'package:matrixStats':

    anyMissing, rowMedians

#################### Start MCMC ####################

Iteration = 50
Iteration = 100
Iteration = 150
Iteration = 200


RUNIT TEST PROTOCOL -- Thu May 06 00:45:04 2021 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
BDMMAcorrect RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
   7.51    0.50    8.00

BDMMAcorrect.Rcheck/tests_x64/Test.Rout


R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("BDMMAcorrect")
This is vegan 2.5-7

Attaching package: 'ellipse'

The following object is masked from 'package:graphics':

    pairs


Attaching package: 'MatrixGenerics'

The following objects are masked from 'package:matrixStats':

    colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
    colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
    colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
    colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
    colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
    colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
    colWeightedMeans, colWeightedMedians, colWeightedSds,
    colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
    rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
    rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
    rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
    rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
    rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
    rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
    rowWeightedSds, rowWeightedVars


Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min


Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid


Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: 'Biobase'

The following object is masked from 'package:MatrixGenerics':

    rowMedians

The following objects are masked from 'package:matrixStats':

    anyMissing, rowMedians

#################### Start MCMC ####################

Iteration = 50
Iteration = 100
Iteration = 150
Iteration = 200


RUNIT TEST PROTOCOL -- Thu May 06 00:45:14 2021 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
BDMMAcorrect RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
   8.95    0.34    9.67

Example timings

BDMMAcorrect.Rcheck/examples_i386/BDMMAcorrect-Ex.timings

nameusersystemelapsed
BDMMA0.010.000.01
VBatch0.470.201.00
fdr_cut0.010.000.01
trace_plot0.020.000.02

BDMMAcorrect.Rcheck/examples_x64/BDMMAcorrect-Ex.timings

nameusersystemelapsed
BDMMA0.000.020.02
VBatch0.830.020.84
fdr_cut000
trace_plot0.000.010.01