Back to Build/check report for BioC 3.11 experimental data

CHECK report for waveTilingData on malbec2

This page was generated on 2020-10-15 20:46:02 -0400 (Thu, 15 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE waveTilingData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 380/391HostnameOS / ArchINSTALLBUILDCHECK
waveTilingData 1.24.0
Kristof De Beuf
Snapshot Date: 2020-10-15 07:30:17 -0400 (Thu, 15 Oct 2020)
URL: https://git.bioconductor.org/packages/waveTilingData
Branch: RELEASE_3_11
Last Commit: 17bd316
Last Changed Date: 2020-04-27 15:10:30 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: waveTilingData
Version: 1.24.0
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:waveTilingData.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings waveTilingData_1.24.0.tar.gz
StartedAt: 2020-10-15 14:20:21 -0400 (Thu, 15 Oct 2020)
EndedAt: 2020-10-15 14:23:56 -0400 (Thu, 15 Oct 2020)
EllapsedTime: 214.6 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: waveTilingData.Rcheck
Warnings: 2

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:waveTilingData.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings waveTilingData_1.24.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.11-data-experiment/meat/waveTilingData.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘waveTilingData/DESCRIPTION’ ... OK
* this is package ‘waveTilingData’ version ‘1.24.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘waveTilingData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 240.9Mb
  sub-directories of 1Mb or more:
    data  240.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... WARNING
  Error loading dataset 'leafdevBQ':
   Error in .requirePackage(package) : 
    unable to find required package 'waveTiling'
  
  Error loading dataset 'leafdevFit':
   Error in .requirePackage(package) : 
    unable to find required package 'waveTiling'
  
  Error loading dataset 'leafdevInfCompare':
   Error in .requirePackage(package) : 
    unable to find required package 'waveTiling'
  
  Error loading dataset 'leafdevMapAndFilterTAIR9':
   Error in .requirePackage(package) : 
    unable to find required package 'waveTiling'
  
  The dataset(s) may use package(s) not declared in the DESCRIPTION file.
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... WARNING
Found the following significant warnings:
  Warning: working directory was changed to ‘/home/biocbuild/bbs-3.11-bioc/R/library/waveTilingData/data’, resetting
Examples with CPU (user + system) or elapsed time > 5s
                           user system elapsed
leafdev                  20.416  0.468  20.885
leafdevBQ                14.739  0.396  15.135
leafdevMapAndFilterTAIR9  7.456  0.072   7.528
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.11-data-experiment/meat/waveTilingData.Rcheck/00check.log’
for details.



Installation output

waveTilingData.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL waveTilingData
###
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘waveTilingData’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (waveTilingData)

Tests output


Example timings

waveTilingData.Rcheck/waveTilingData-Ex.timings

nameusersystemelapsed
leafdev20.416 0.46820.885
leafdevBQ14.739 0.39615.135
leafdevFit0.7480.0190.768
leafdevInfCompare0.7510.0280.779
leafdevMapAndFilterTAIR97.4560.0727.528