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CHECK report for PepsNMRData on malbec2

This page was generated on 2020-10-15 20:45:54 -0400 (Thu, 15 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE PepsNMRData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 270/391HostnameOS / ArchINSTALLBUILDCHECK
PepsNMRData 1.6.0
Manon Martin
Snapshot Date: 2020-10-15 07:30:17 -0400 (Thu, 15 Oct 2020)
URL: https://git.bioconductor.org/packages/PepsNMRData
Branch: RELEASE_3_11
Last Commit: 19ae3d7
Last Changed Date: 2020-04-27 16:40:36 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: PepsNMRData
Version: 1.6.0
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:PepsNMRData.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings PepsNMRData_1.6.0.tar.gz
StartedAt: 2020-10-15 13:54:46 -0400 (Thu, 15 Oct 2020)
EndedAt: 2020-10-15 13:55:12 -0400 (Thu, 15 Oct 2020)
EllapsedTime: 26.2 seconds
RetCode: 0
Status:  OK 
CheckDir: PepsNMRData.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:PepsNMRData.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings PepsNMRData_1.6.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.11-data-experiment/meat/PepsNMRData.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PepsNMRData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PepsNMRData’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PepsNMRData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 57.2Mb
  sub-directories of 1Mb or more:
    data     47.8Mb
    extdata   9.3Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.11-data-experiment/meat/PepsNMRData.Rcheck/00check.log’
for details.



Installation output

PepsNMRData.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL PepsNMRData
###
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘PepsNMRData’ ...
** using staged installation
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PepsNMRData)

Tests output


Example timings

PepsNMRData.Rcheck/PepsNMRData-Ex.timings

nameusersystemelapsed
Data_HS_sp0.5010.0520.791
Data_HU_sp0.4060.0760.604
FidData_HS0.2370.0000.257
FidData_HU0.160.000.17
FidInfo_HS0.0010.0000.001
FidInfo_HS_sp0.0010.0000.000
FidInfo_HU0.0010.0000.001
FidInfo_HU_sp0.0010.0000.001
FinalSpecta_HS0.0480.0000.137
FinalSpecta_HU0.0050.0000.005
Group_HS0.0010.0000.001
Group_HU000
PEPSNMRData-package0.0030.0000.003
RawFidData_HS0.0060.0000.006