Back to Build/check report for BioC 3.11 experimental data

CHECK report for miRNATarget on malbec2

This page was generated on 2020-10-15 20:45:51 -0400 (Thu, 15 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE miRNATarget PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 228/391HostnameOS / ArchINSTALLBUILDCHECK
miRNATarget 1.26.0
Y-h. Taguchi
Snapshot Date: 2020-10-15 07:30:17 -0400 (Thu, 15 Oct 2020)
URL: https://git.bioconductor.org/packages/miRNATarget
Branch: RELEASE_3_11
Last Commit: 49ee1c7
Last Changed Date: 2020-04-27 15:10:05 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: miRNATarget
Version: 1.26.0
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings miRNATarget_1.26.0.tar.gz
StartedAt: 2020-10-15 13:43:50 -0400 (Thu, 15 Oct 2020)
EndedAt: 2020-10-15 13:45:26 -0400 (Thu, 15 Oct 2020)
EllapsedTime: 95.7 seconds
RetCode: 0
Status:  OK 
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings miRNATarget_1.26.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.11-data-experiment/meat/miRNATarget.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.26.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.11-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.



Installation output

miRNATarget.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL miRNATarget
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘miRNATarget’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (miRNATarget)

Tests output


Example timings

miRNATarget.Rcheck/miRNATarget-Ex.timings

nameusersystemelapsed
HS_conv_id0.0130.0000.012
HS_refseq_to_affy_hc_g1100.0040.0000.005
HS_refseq_to_affy_hg_focus0.0180.0000.019
HS_refseq_to_affy_hg_u133_plus_20.0580.0040.063
HS_refseq_to_affy_hg_u133a0.0350.0000.035
HS_refseq_to_affy_hg_u133a_20.0350.0000.034
HS_refseq_to_affy_hg_u133b0.0140.0040.018
HS_refseq_to_affy_hg_u95a0.0240.0000.025
HS_refseq_to_affy_hg_u95av20.0210.0000.020
HS_refseq_to_affy_hg_u95b0.0130.0000.014
HS_refseq_to_affy_hg_u95c0.0060.0040.011
HS_refseq_to_affy_hg_u95d0.0060.0000.007
HS_refseq_to_affy_hg_u95e0.0100.0000.011
HS_refseq_to_affy_huex_1_0_st_v20.9110.0160.926
HS_refseq_to_affy_hugene_1_0_st_v10.0510.0000.051
HS_refseq_to_affy_hugenefl0.0140.0000.014
HS_refseq_to_affy_u133_x3p0.0710.0000.071
HS_refseq_to_agilent_cgh_44b0.0120.0000.012
HS_refseq_to_agilent_wholegenome0.0660.0000.066
HS_refseq_to_canonical_transcript_stable_id0.0610.0000.062
HS_refseq_to_ccds0.0360.0000.036
HS_refseq_to_codelink0.0330.0040.038
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0010.0000.002
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.0010.0000.002
HS_refseq_to_efg_agilent_wholegenome_4x44k_v20.0020.0000.001
HS_refseq_to_embl0.7300.0040.734
HS_refseq_to_ensembl_exon_id0.0010.0000.002
HS_refseq_to_ensembl_gene_id0.0470.0000.046
HS_refseq_to_ensembl_peptide_id0.0340.0080.042
HS_refseq_to_ensembl_transcript_id0.0520.0000.052
HS_refseq_to_entrezgene0.0450.0000.044
HS_refseq_to_hgnc_id0.1590.0000.159
HS_refseq_to_hgnc_symbol0.0380.0000.038
HS_refseq_to_hgnc_transcript_name0.0420.0000.041
HS_refseq_to_illumina_humanht_120.0440.0000.044
HS_refseq_to_illumina_humanwg_6_v10.0390.0000.039
HS_refseq_to_illumina_humanwg_6_v20.0340.0000.033
HS_refseq_to_illumina_humanwg_6_v30.0360.0040.040
HS_refseq_to_interpro0.110.000.11
HS_refseq_to_ipi0.0960.0000.096
HS_refseq_to_merops0.0040.0000.004
HS_refseq_to_pdb0.0830.0000.084
HS_refseq_to_pfam0.0660.0000.066
HS_refseq_to_phalanx_onearray0.0390.0000.038
HS_refseq_to_protein_id1.1050.0041.109
HS_refseq_to_refseq_dna0.0520.0000.052
HS_refseq_to_refseq_genomic0.0010.0000.001
HS_refseq_to_refseq_peptide0.0890.0000.089
HS_refseq_to_rfam0.0020.0000.003
HS_refseq_to_rfam_gene_name0.0020.0000.001
HS_refseq_to_rfam_transcript_name0.0010.0000.001
HS_refseq_to_smart0.0340.0000.034
HS_refseq_to_tigrfam0.0050.0000.004
HS_refseq_to_ucsc0.0470.0000.047
HS_refseq_to_unigene0.0530.0080.061
HS_refseq_to_uniprot_genename0.0390.0000.039
HS_refseq_to_uniprot_genename_transcript_name0.0010.0000.002
HS_refseq_to_uniprot_sptrembl0.0010.0000.001
HS_refseq_to_uniprot_swissprot0.0020.0000.001
HS_refseq_to_uniprot_swissprot_accession0.0010.0000.001
HS_refseq_to_wikigene_id0.0010.0000.001
HS_refseq_to_wikigene_name0.0430.0000.043
MM_conv_id0.0030.0000.003
MM_refseq_to_affy_mg_u74a0.0150.0000.016
MM_refseq_to_affy_mg_u74av20.0130.0000.014
MM_refseq_to_affy_mg_u74b0.0080.0040.011
MM_refseq_to_affy_mg_u74bv20.0120.0000.012
MM_refseq_to_affy_mg_u74c0.0000.0040.005
MM_refseq_to_affy_mg_u74cv20.0050.0000.006
MM_refseq_to_affy_moe430a0.0290.0000.029
MM_refseq_to_affy_moe430b0.0140.0000.014
MM_refseq_to_affy_moex_1_0_st_v10.3660.0080.374
MM_refseq_to_affy_mogene_1_0_st_v10.0380.0000.037
MM_refseq_to_affy_mouse430_20.0390.0000.039
MM_refseq_to_affy_mouse430a_20.0280.0000.028
MM_refseq_to_affy_mu11ksuba0.0090.0000.009
MM_refseq_to_affy_mu11ksubb0.0070.0000.006
MM_refseq_to_agilent_wholegenome0.0550.0000.055
MM_refseq_to_canonical_transcript_stable_id0.0520.0000.051
MM_refseq_to_ccds0.0270.0000.026
MM_refseq_to_codelink0.0250.0040.028
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0020.0000.001
MM_refseq_to_efg_agilent_wholegenome_4x44k_v10.0010.0000.001
MM_refseq_to_efg_agilent_wholegenome_4x44k_v20.0010.0000.001
MM_refseq_to_embl0.2730.0040.277
MM_refseq_to_ensembl_exon_id0.0020.0000.001
MM_refseq_to_ensembl_gene_id0.1500.0080.158
MM_refseq_to_ensembl_peptide_id0.0330.0000.033
MM_refseq_to_ensembl_transcript_id0.0360.0000.036
MM_refseq_to_entrezgene0.0320.0000.032
MM_refseq_to_fantom0.0950.0000.095
MM_refseq_to_illumina_mousewg_6_v10.0470.0000.047
MM_refseq_to_illumina_mousewg_6_v20.0470.0000.047
MM_refseq_to_interpro0.140.000.14
MM_refseq_to_ipi0.0020.0000.003
MM_refseq_to_merops0.0060.0000.007
MM_refseq_to_mgi_id0.0650.0040.068
MM_refseq_to_mgi_symbol0.0520.0000.051
MM_refseq_to_mgi_transcript_name0.0380.0040.042
MM_refseq_to_pdb0.0110.0000.010
MM_refseq_to_pfam0.0620.0040.066
MM_refseq_to_phalanx_onearray0.0390.0000.039
MM_refseq_to_protein_id0.3020.0040.307
MM_refseq_to_refseq_dna0.0480.0000.048
MM_refseq_to_refseq_peptide0.0750.0040.079
MM_refseq_to_rfam0.0020.0000.001
MM_refseq_to_rfam_gene_name0.0020.0000.001
MM_refseq_to_rfam_transcript_name0.0010.0000.001
MM_refseq_to_smart0.0280.0000.028
MM_refseq_to_tigrfam0.0050.0000.004
MM_refseq_to_ucsc0.0350.0040.038
MM_refseq_to_unigene0.0490.0000.049
MM_refseq_to_uniprot_genename0.0340.0000.034
MM_refseq_to_uniprot_genename_transcript_name0.0020.0000.001
MM_refseq_to_uniprot_sptrembl0.0010.0000.001
MM_refseq_to_uniprot_swissprot0.0010.0000.001
MM_refseq_to_uniprot_swissprot_accession0.0010.0000.002
MM_refseq_to_wikigene_id0.0010.0000.002
MM_refseq_to_wikigene_name0.0270.0040.032
TBL21.1730.0641.238
TBL2_HS1.3570.0921.450
TBL2_MM0.7300.0760.807
conv_id0.0000.0010.002
id_conv0.0250.0020.027