Back to Build/check report for BioC 3.11 experimental data

CHECK report for dressCheck on malbec2

This page was generated on 2020-10-15 20:45:46 -0400 (Thu, 15 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE dressCheck PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 99/391HostnameOS / ArchINSTALLBUILDCHECK
dressCheck 0.26.0
Vincent Carey
Snapshot Date: 2020-10-15 07:30:17 -0400 (Thu, 15 Oct 2020)
URL: https://git.bioconductor.org/packages/dressCheck
Branch: RELEASE_3_11
Last Commit: 0a5124f
Last Changed Date: 2020-04-27 15:03:42 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: dressCheck
Version: 0.26.0
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:dressCheck.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings dressCheck_0.26.0.tar.gz
StartedAt: 2020-10-15 13:17:11 -0400 (Thu, 15 Oct 2020)
EndedAt: 2020-10-15 13:17:53 -0400 (Thu, 15 Oct 2020)
EllapsedTime: 42.2 seconds
RetCode: 0
Status:  OK 
CheckDir: dressCheck.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:dressCheck.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings dressCheck_0.26.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.11-data-experiment/meat/dressCheck.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘dressCheck/DESCRIPTION’ ... OK
* this is package ‘dressCheck’ version ‘0.26.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘dressCheck’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 65.8Mb
  sub-directories of 1Mb or more:
    data         54.4Mb
    sampleRemap  11.2Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: DrAsGiven.Rd:69-71: Dropping empty section \details
prepare_Rd: DrAsGiven.Rd:72-74: Dropping empty section \source
prepare_Rd: DrAsGiven.Rd:75-77: Dropping empty section \references
prepare_Rd: E2F3sig.probes.Rd:16-18: Dropping empty section \details
prepare_Rd: E2F3sig.probes.Rd:19-21: Dropping empty section \source
prepare_Rd: E2F3sig.probes.Rd:22-24: Dropping empty section \references
prepare_Rd: Src.probes.Rd:17-19: Dropping empty section \details
prepare_Rd: Src.probes.Rd:20-22: Dropping empty section \source
prepare_Rd: Src.probes.Rd:23-25: Dropping empty section \references
prepare_Rd: c119.Rd:97-99: Dropping empty section \source
prepare_Rd: c119.Rd:100-102: Dropping empty section \references
prepare_Rd: corrp116.Rd:71-73: Dropping empty section \details
prepare_Rd: corrp116.Rd:74-76: Dropping empty section \source
prepare_Rd: corrp116.Rd:77-79: Dropping empty section \references
prepare_Rd: e2f3Wts.Rd:19-21: Dropping empty section \details
prepare_Rd: e2f3Wts.Rd:22-24: Dropping empty section \source
prepare_Rd: e2f3Wts.Rd:25-27: Dropping empty section \references
prepare_Rd: platsigprobes.Rd:17-19: Dropping empty section \details
prepare_Rd: platsigprobes.Rd:20-22: Dropping empty section \source
prepare_Rd: platsigprobes.Rd:23-25: Dropping empty section \references
prepare_Rd: pwLines.Rd:127-129: Dropping empty section \details
prepare_Rd: pwLines.Rd:130-132: Dropping empty section \source
prepare_Rd: pwLines.Rd:133-135: Dropping empty section \references
prepare_Rd: srcWts.Rd:19-21: Dropping empty section \details
prepare_Rd: srcWts.Rd:22-24: Dropping empty section \source
prepare_Rd: srcWts.Rd:25-27: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.11-data-experiment/meat/dressCheck.Rcheck/00check.log’
for details.



Installation output

dressCheck.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL dressCheck
###
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘dressCheck’ ...
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dressCheck)

Tests output


Example timings

dressCheck.Rcheck/dressCheck-Ex.timings

nameusersystemelapsed
DrAsGiven0.8580.0200.878
E2F3sig.probes0.0010.0000.002
Src.probes0.0010.0000.001
c1191.5880.0561.643
corrp1160.9580.0230.983
e2f3Wts0.0010.0000.001
platsigprobes0.0000.0000.001
pwLines1.4340.0641.498
srcWts0.0010.0000.001